PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.26959s0259.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family WRKY
Protein Properties Length: 257aa    MW: 28895.7 Da    PI: 6.8677
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.26959s0259.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY69.45.2e-22103161258
                           --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS CS
                  WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnh 58 
                           +Dg+ WrKYGqK +++s++pr YY+C +a   +C++kkkv++ + d  +  ++Y g+H++
  Bostr.26959s0259.1.p 103 SDGFIWRKYGQKIITNSPHPRCYYKCVYAkdlKCNAKKKVQKIK-DRPLYRTIYVGQHTC 161
                           7***************************99999**********9.*************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081116.74297164IPR003657WRKY domain
Gene3DG3DSA:2.20.25.805.5E-22100161IPR003657WRKY domain
SuperFamilySSF1182901.44E-20101161IPR003657WRKY domain
SMARTSM007741.9E-28102163IPR003657WRKY domain
PfamPF031066.0E-22104161IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MSSYIGQEGV EALLSSQGCA NSLKTLYDNR EISSVSTEPL INNILYFLSL ALSSIDSPNP  60
PPHHESSFQS MASHKSRRSS KRKIYGAEGL EINIADSPAP RPSDGFIWRK YGQKIITNSP  120
HPRCYYKCVY AKDLKCNAKK KVQKIKDRPL YRTIYVGQHT CVAAFAINDD TYGSKMIQFD  180
QIVSESVMSQ LATIDHQALT MEDKDTDHIM NEFDVNDFLV DDDQFWANQS LPFPSGDLMF  240
PENPVALIRT PSRFKP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A2e-151041611068OsWRKY45
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17682RRSSKRK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.26959s0259.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_176829.11e-102WRKY DNA-binding protein 64
SwissprotQ9C5571e-104WRK64_ARATH; Probable WRKY transcription factor 64
TrEMBLA0A178W9L21e-103A0A178W9L2_ARATH; WRKY67
STRINGBostr.26959s0259.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56091847
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66560.11e-101WRKY DNA-binding protein 64