PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.26959s0080.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family C3H
Protein Properties Length: 308aa    MW: 34180.2 Da    PI: 7.1546
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.26959s0080.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH47.33.4e-15223247226
                           -S---SGGGGTS--TTTTT-SS-SS CS
               zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                           ktelC+ +++tGtC+yGd C+FaHg
  Bostr.26959s0080.1.p 223 KTELCNKWQETGTCPYGDHCQFAHG 247
                           9***********************8 PP
2zf-CCCH21.34.8e-07260285126
                           --S---SGGGGTS--TTTTT-SS-SS CS
               zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                           ykte Cr  +++ +C+yG rC+F H+
  Bostr.26959s0080.1.p 260 YKTEVCRMVLAGDICPYGHRCHFRHS 285
                           9**********55**********998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.102.0E-18216254IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.92E-11218253IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.23221249IPR000571Zinc finger, CCCH-type
SMARTSM003563.9E-9221248IPR000571Zinc finger, CCCH-type
PfamPF006423.1E-12223247IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.88E-9255290IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.8E-13255288IPR000571Zinc finger, CCCH-type
SMARTSM003561.8E-5259286IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.272259287IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MENEIAPFTY SGSSDSSCGG GVSSSLFSDQ LYKSTRNIMQ QRQDMVNREA LCYTRLHEAS  60
LEAEALRLEN TELRSMNRHL KTELSSLIRS SIQSRLDYDR VPLRMLSNLS IGDNDADEVE  120
NQNRTVKRDD VSDESPTSVM ENEDLNRSSL PKSISVRSSG YSKASQGGGG VAQCGKSSGT  180
IPKTGTCGGQ LSTTQKVYVR GGGKKEDQEE EIEVEVYNQG MTKTELCNKW QETGTCPYGD  240
HCQFAHGIKE LRPVIRHPRY KTEVCRMVLA GDICPYGHRC HFRHSLSEQE KLVAAGFKPK  300
SSFKLLT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A1e-22223288570Butyrate response factor 2
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00383ampDAPTransfer from AT1G68200Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.26959s0080.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0260770.0BT026077.1 Arabidopsis thaliana At1g68200 mRNA, complete cds.
GenBankDQ0565140.0DQ056514.1 Arabidopsis thaliana zinc finger (CCCH-type) family protein (At1g68200) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006302558.10.0zinc finger CCCH domain-containing protein 15
SwissprotQ9C9F51e-171C3H15_ARATH; Zinc finger CCCH domain-containing protein 15
TrEMBLR0GI950.0R0GI95_9BRAS; Uncharacterized protein
STRINGBostr.26959s0080.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM72872339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68200.11e-147C3H family protein