PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.26959s0010.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family HSF
Protein Properties Length: 132aa    MW: 15178.5 Da    PI: 10.4285
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.26959s0010.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind64.91.9e-20121062102
                           HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHH..HSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXX CS
          HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpk..yFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkk 88 
                           F + +y++++d++++++isws++++sf++++++ef++k+L++      snf+ F   L+ YgFk+ k +++         eF + +F +
  Bostr.26959s0010.1.p  12 FYTGVYQVVNDPSFDSIISWSKSNKSFIIWNPKEFHSKILSRpgPIHCSNFTMFFYDLKFYGFKRAKVSQH--------LEFGNANFVR 92 
                           78889***********************************88657999*****************999885........6********* PP

                           XXXXXXXXXXXXXX CS
          HSF_DNA-bind  89 gkkellekikrkks 102
                           g+ ell k++rk+ 
  Bostr.26959s0010.1.p  93 GQPELLPKMQRKAI 106
                           ***********975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004155.3E-248104IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467852.25E-2110104IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.104.5E-2210104IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004474.7E-2012104IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 132 aa     Download sequence    Send to blast
MANNLSCVLS PFYTGVYQVV NDPSFDSIIS WSKSNKSFII WNPKEFHSKI LSRPGPIHCS  60
NFTMFFYDLK FYGFKRAKVS QHLEFGNANF VRGQPELLPK MQRKAISKNC RRFEAKARAE  120
KSADRLQYLG I*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.26959s0010.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010445525.16e-46PREDICTED: heat stress transcription factor A-4a-like
TrEMBLD7MG975e-34D7MG97_ARALL; Uncharacterized protein
STRINGBostr.26959s0010.1.p3e-94(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM50671450
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G19630.15e-26HSF family protein