PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.26833s0872.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family HSF
Protein Properties Length: 368aa    MW: 41639.1 Da    PI: 6.5234
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.26833s0872.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind96.62.6e-30711682103
                           HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHT.....TEEE---SSBTTTTXTTSEEEEESX CS
          HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmY.....gFkkvkdeekkskskekiweFkhks 85 
                           Fl+k++ei++d+ ++ ++sws + +s++++d+ ef++++LpkyFkh+nf+SFvRQLn+Y     gFkkv++         + weF+++ 
  Bostr.26833s0872.1.p  71 FLRKTFEIVDDAVTDPIVSWSPTRKSLIIWDSYEFSESLLPKYFKHKNFSSFVRQLNTYvstkrGFKKVDS---------DRWEFANEG 150
                           9********************999***********************************555545555555.........55******* PP

                           XXXXXXXXXXXXXXXXXX CS
          HSF_DNA-bind  86 Fkkgkkellekikrkkse 103
                           F+ gkk+ll++ikr++++
  Bostr.26833s0872.1.p 151 FQGGKKHLLKTIKRRSTT 168
                           ***************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004156.6E-4967165IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.5E-2867165IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.104.0E-3268165IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004473.4E-2771165IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.3E-147194IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.3E-14109121IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.3E-14122134IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MTAIPSVVDI ESSPLLGQET ATETVTVKDD QTGSGDDVVS LIKEEDDAVN FNESSSSVGF  60
SKLHEIGLTP FLRKTFEIVD DAVTDPIVSW SPTRKSLIIW DSYEFSESLL PKYFKHKNFS  120
SFVRQLNTYV STKRGFKKVD SDRWEFANEG FQGGKKHLLK TIKRRSTTNC NKEASTTRLK  180
TEVEVKSLKE DQSPMTLEVL KLKQQQEESH HQVVTVHEKI HGVESEQRHM LSFFANLAKE  240
QRFVERLVKK RKMNQQRDLE ATELVKKLKM LQDQETQKNL VDVESHLIIK EFMAMAATQP  300
DPTPDISMNN QSGNTRCHLN TEELLVDGGS MGRNKTDVDV NGRIGVSKTC SIALEKVQNS  360
MLYPELP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A4e-187116820123Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1158164LKTIKRR
Functional Description ? help Back to Top
Source Description
UniProtSeed-specific transcriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). Seems to be specialized for the developmental expression of heat shock protein (HSP) genes during seed maturation. Activated by ABI3. {ECO:0000269|PubMed:17220197}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.26833s0872.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010446368.10.0PREDICTED: heat stress transcription factor A-9-like
RefseqXP_010446377.10.0PREDICTED: heat stress transcription factor A-9-like
SwissprotQ9LVW21e-170HSFA9_ARATH; Heat stress transcription factor A-9
TrEMBLR0F1R41e-175R0F1R4_9BRAS; Uncharacterized protein
STRINGBostr.26833s0872.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM74981940
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G54070.11e-172heat shock transcription factor A9