PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Bostr.26833s0491.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 184aa MW: 21698.7 Da PI: 7.1614 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 53.4 | 8.6e-17 | 8 | 135 | 4 | 127 |
NAM 4 GfrFhPtdeelvveyLkkkvegkklel..eevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratk....sgyWk 84 ++rF Ptd e+ +L +k++ e+ ++ i+ d y+++P + k +++ +++++F++r + +++++++nra++ g W+ Bostr.26833s0491.1.p 8 CVRFAPTDIEIFETFLIPKLALPVDEVlpDSLIHLYDFYQHDPVTSAKpgSLYFPADNYWYFVTRTRLNPRSTKPNRAIRtnpvLGKWR 96 68*****************99877444213569999*******99863344444445555677778889999*****866557789*** PP NAM 85 atgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyr 127 + gk++++++ + + l++t+ + +++ kt W m+ey+ Bostr.26833s0491.1.p 97 KVGKTERIVN-GMVNLRLRHTFDYV---NQQNLKTGWRMNEYE 135 **********.9999*********9...344469********7 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 18.93 | 5 | 154 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 1.12E-17 | 8 | 154 | IPR003441 | NAC domain |
Pfam | PF02365 | 9.8E-12 | 9 | 135 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 184 aa Download sequence Send to blast |
MEEQRWLCVR FAPTDIEIFE TFLIPKLALP VDEVLPDSLI HLYDFYQHDP VTSAKPGSLY 60 FPADNYWYFV TRTRLNPRST KPNRAIRTNP VLGKWRKVGK TERIVNGMVN LRLRHTFDYV 120 NQQNLKTGWR MNEYERAAVG NAFQSMVVVH LVYKRNLDQT LHDQDLHDQQ NFEDIFNDLL 180 ENV* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Bostr.26833s0491.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_002865962.2 | 2e-74 | uncharacterized protein LOC9300309 isoform X1 | ||||
Refseq | XP_020869287.1 | 9e-75 | uncharacterized protein LOC9300309 isoform X4 | ||||
Refseq | XP_020869291.1 | 9e-75 | uncharacterized protein LOC9300309 isoform X5 | ||||
Refseq | XP_020869302.1 | 5e-75 | uncharacterized protein LOC9300309 isoform X6 | ||||
Refseq | XP_020869311.1 | 5e-75 | uncharacterized protein LOC9300309 isoform X7 | ||||
TrEMBL | D7MSW3 | 3e-74 | D7MSW3_ARALL; Uncharacterized protein | ||||
STRING | Bostr.26833s0491.1.p | 1e-135 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM17442 | 7 | 9 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G69490.1 | 7e-09 | NAC-like, activated by AP3/PI |
Link Out ? help Back to Top | |
---|---|
Phytozome | Bostr.26833s0491.1.p |