PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bostr.26833s0482.1.p

Organism

Boechera stricta

Taxonomic ID

72658

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera

Family

Protein Properties

Length: 297aa MW: 34059.2 Da PI: 5.0598

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bostr.26833s0482.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	61.8	1.1e-19	13	104	1	99
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrs 88 f+k++ +s+ ++++ lv+p+ + + + ++ ++t +l+ ++g+ W+vk + ++++ + +++GW++Fvk+ngL ++Df++F++dg++ Bostr.26833s0482.1.p 13 FLKIF-NSHEHSQH-LVIPRGYNKYYPNP--LPQTAVLKKPEGNFWTVKW--KISKEEtISFQEGWEKFVKDNGLIDRDFLLFTYDGSR 95 66666.77777777.*****9666644..889************..555544499********************9988 PP EE..EEEEE-S CS B3 89 efelvvkvfrk 99 +f +v+++r+ Bostr.26833s0482.1.p 96 SF--WVRIHRN 104 88..99986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	3.34E-21	9	104	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	8.4E-21	10	104	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.77E-17	11	103	No hit	No description
PROSITE profile	PS50863	13.578	11	105	IPR003340	B3 DNA binding domain
Pfam	PF02362	7.8E-18	13	104	IPR003340	B3 DNA binding domain
SMART	SM01019	5.0E-20	13	105	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	4.5E-5	200	283	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	1.57E-6	200	283	IPR015300	DNA-binding pseudobarrel domain
SMART	SM01019	0.12	205	295	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 297 aa Download sequence Send to blast
MELENGFPPY PDFLKIFNSH EHSQHLVIPR GYNKYYPNPL PQTAVLKKPE GNFWTVKWKI 60 SKEETISFQE GWEKFVKDNG LIDRDFLLFT YDGSRSFWVR IHRNGSPVAA STPIKIQEIS 120 DDEDETTGDG EHHMEEGDSH ENMIVSLSLG TSDEVSDDDD DEDIAICEVN KASGSSKKVG 180 RVDRTSSIPD SINLEAYLDD PQNPFFIATS SCSRRVLVIS TKVVKDYELK FERTINLIDD 240 FGELKRNVGK WKDRVVVHKW DEIYNRNKAK QGDLIICEIL REGDVVRTVK MHFVKK*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1yel_A	4e-16	13	102	11	99	At1g16640
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bostr.26833s0482.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020881209.1	1e-166	B3 domain-containing protein At5g57720 isoform X1
Swissprot	Q9FHH1	1e-151	Y5772_ARATH; B3 domain-containing protein At5g57720
TrEMBL	D7MNV0	1e-163	D7MNV0_ARALL; Uncharacterized protein
STRING	Bostr.26833s0482.1.p	0.0	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13797	17	23

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57720.1	1e-141	B3 family protein

Link Out ? help Back to Top
Phytozome	Bostr.26833s0482.1.p

Publications ? help Back to Top
Mantegazza O, et al. Analysis of the arabidopsis REM gene family predicts functions during flower development. Ann. Bot., 2014. 114(7): p. 1507-15 [PMID:25002525]