PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bostr.26833s0424.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
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Family | B3 | ||||||||
Protein Properties | Length: 234aa MW: 26922 Da PI: 9.1544 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 33.8 | 5.9e-11 | 115 | 175 | 18 | 90 |
--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS B3 18 lpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 lp +f+ + ++++lede+g+++e +i r++ l++GWk+F +++L++gD ++F+l++ ++f Bostr.26833s0424.1.p 115 LPSRFCVD--------VQVVLEDEEGEEYEAVYIGRRSA----LSGGWKRFGLDHKLDDGDALLFELVEPKRF 175 66666633........359**************544444....9**********************9976666 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01019 | 1.8E-6 | 101 | 184 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.5E-8 | 116 | 175 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 2.16E-10 | 121 | 182 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 6.6E-9 | 123 | 176 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 9.248 | 124 | 183 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 234 aa Download sequence Send to blast |
MAYEEARKLR LEENHKRFQV PFIVTTHCSN MNLRRSRHNS SWASYIARPL HECKFSSYEE 60 KVGVLKAAEE FQSRLESPQP FLCEIYDSLP RLQLLLAGTI FVLTYMGLLA ISKGLPSRFC 120 VDVQVVLEDE EGEEYEAVYI GRRSALSGGW KRFGLDHKLD DGDALLFELV EPKRFKGMYA 180 CSTKSHVVGI YVFRGNENAN LTSAGKRCKV KKKIRMLKNQ LMKETAQPQR DHPQ |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 208 | 214 | KVKKKIR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bostr.26833s0424.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020878363.1 | 2e-67 | putative B3 domain-containing protein At5g58280 isoform X2 | ||||
Swissprot | Q9FHB2 | 4e-66 | Y5828_ARATH; Putative B3 domain-containing protein At5g58280 | ||||
TrEMBL | D7MPM5 | 1e-67 | D7MPM5_ARALL; Predicted protein | ||||
STRING | Bostr.26833s0424.1.p | 1e-175 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM16141 | 12 | 14 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G58280.1 | 4e-63 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Bostr.26833s0424.1.p |
Publications ? help Back to Top | |||
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