PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bostr.26833s0388.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
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Family | C3H | ||||||||
Protein Properties | Length: 611aa MW: 66719.9 Da PI: 5.6867 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 26.1 | 1.5e-08 | 253 | 273 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ f++ G C++Gd+C +aHg Bostr.26833s0388.2.p 253 PCPEFRK-GSCSRGDTCEYAHG 273 8******.*************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF48403 | 1.87E-13 | 18 | 136 | IPR020683 | Ankyrin repeat-containing domain |
Pfam | PF12796 | 1.9E-9 | 54 | 124 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50297 | 13.973 | 58 | 133 | IPR020683 | Ankyrin repeat-containing domain |
SMART | SM00248 | 0.0044 | 58 | 88 | IPR002110 | Ankyrin repeat |
Gene3D | G3DSA:1.25.40.20 | 1.0E-13 | 59 | 133 | IPR020683 | Ankyrin repeat-containing domain |
CDD | cd00204 | 1.09E-13 | 60 | 133 | No hit | No description |
PROSITE profile | PS50088 | 9.591 | 93 | 128 | IPR002110 | Ankyrin repeat |
SMART | SM00248 | 0.0049 | 93 | 125 | IPR002110 | Ankyrin repeat |
SMART | SM00356 | 4.9E-5 | 248 | 274 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.5E-4 | 252 | 275 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.263 | 253 | 275 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 5.4E-6 | 253 | 273 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 5.4E-4 | 281 | 311 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 20 | 283 | 306 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 6.221 | 283 | 307 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 611 aa Download sequence Send to blast |
MGDDELSHLK FSLLLELSAC NDLSGFKSLV EEEEGLESID GSGLWYGRRL GSKKMGFEER 60 TPLMIAALFG SKEIVDYIIS TGLVDVNRSC GSDGATALHC AVSGLSANSL EVVTLLLKGS 120 ADPDSCDAYG NKPGDIIFPC LSPIFGARKK VLEHLLKGND DLNEVNGQEE GEREVEVSVS 180 PPRGSERREY PVDPTLPDIK NGIYGTDEFR MYAFKIKPCS RAYSHDWTEC PFVHPGENAR 240 RRDPRKYHYS CVPCPEFRKG SCSRGDTCEY AHGIFECWLH PAQYRTRLCK DETNCSRRVC 300 FFAHKPEELR PLYPSTGSGV PSPRSSFSSC NSSSAFDMAP ISPLPLGAST TPPLSPNGVS 360 SPVGGGKTWM NWPTITPPAL QLPGSRLKSA LNAREIDFSE EIQSLSSPTR WNNNTPMSAA 420 SSPFSGKGMN RLAGAAMSPV NSLTDMFGTE DNTSGLQIRR SIINSQLHPN SLSSSPVGAN 480 SLFSVDSSTV LASRAAEFAK QRSQSFIERS NGLNHHPAIS SMSTTCLNDW GSLDGKLDWS 540 VQGDELQKLR KSTSFRLRAG GMESRLPNEG TGLEEPDVSW VEPLVKEPQE TRLAPVWMEQ 600 SYMETKQTVA * |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00566 | DAP | Transfer from AT5G58620 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bostr.26833s0388.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB020755 | 0.0 | AB020755.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MZN1. | |||
GenBank | AY054176 | 0.0 | AY054176.1 Arabidopsis thaliana AT5g58620/mzn1_70 mRNA, complete cds. | |||
GenBank | AY103314 | 0.0 | AY103314.1 Arabidopsis thaliana AT5g58620/mzn1_70 mRNA, complete cds. | |||
GenBank | CP002688 | 0.0 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010483463.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 66 | ||||
Swissprot | Q9LUZ4 | 0.0 | C3H66_ARATH; Zinc finger CCCH domain-containing protein 66 | ||||
TrEMBL | D7MQF9 | 0.0 | D7MQF9_ARALL; Zinc finger (CCCH-type) family protein | ||||
STRING | Bostr.26833s0388.1.p | 0.0 | (Boechera stricta) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G58620.1 | 0.0 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Bostr.26833s0388.2.p |