PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.26833s0388.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family C3H
Protein Properties Length: 611aa    MW: 66719.9 Da    PI: 5.6867
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.26833s0388.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.11.5e-08253273526
                           --SGGGGTS--TTTTT-SS-SS CS
               zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                           +C+ f++ G C++Gd+C +aHg
  Bostr.26833s0388.1.p 253 PCPEFRK-GSCSRGDTCEYAHG 273
                           8******.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484031.87E-1318136IPR020683Ankyrin repeat-containing domain
PfamPF127961.9E-954124IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029713.97358133IPR020683Ankyrin repeat-containing domain
SMARTSM002480.00445888IPR002110Ankyrin repeat
Gene3DG3DSA:1.25.40.201.0E-1359133IPR020683Ankyrin repeat-containing domain
CDDcd002041.09E-1360133No hitNo description
PROSITE profilePS500889.59193128IPR002110Ankyrin repeat
SMARTSM002480.004993125IPR002110Ankyrin repeat
SMARTSM003564.9E-5248274IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.5E-4252275IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.263253275IPR000571Zinc finger, CCCH-type
PfamPF006425.4E-6253273IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.4E-4281311IPR000571Zinc finger, CCCH-type
SMARTSM0035620283306IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.221283307IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 611 aa     Download sequence    Send to blast
MGDDELSHLK FSLLLELSAC NDLSGFKSLV EEEEGLESID GSGLWYGRRL GSKKMGFEER  60
TPLMIAALFG SKEIVDYIIS TGLVDVNRSC GSDGATALHC AVSGLSANSL EVVTLLLKGS  120
ADPDSCDAYG NKPGDIIFPC LSPIFGARKK VLEHLLKGND DLNEVNGQEE GEREVEVSVS  180
PPRGSERREY PVDPTLPDIK NGIYGTDEFR MYAFKIKPCS RAYSHDWTEC PFVHPGENAR  240
RRDPRKYHYS CVPCPEFRKG SCSRGDTCEY AHGIFECWLH PAQYRTRLCK DETNCSRRVC  300
FFAHKPEELR PLYPSTGSGV PSPRSSFSSC NSSSAFDMAP ISPLPLGAST TPPLSPNGVS  360
SPVGGGKTWM NWPTITPPAL QLPGSRLKSA LNAREIDFSE EIQSLSSPTR WNNNTPMSAA  420
SSPFSGKGMN RLAGAAMSPV NSLTDMFGTE DNTSGLQIRR SIINSQLHPN SLSSSPVGAN  480
SLFSVDSSTV LASRAAEFAK QRSQSFIERS NGLNHHPAIS SMSTTCLNDW GSLDGKLDWS  540
VQGDELQKLR KSTSFRLRAG GMESRLPNEG TGLEEPDVSW VEPLVKEPQE TRLAPVWMEQ  600
SYMETKQTVA *
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00566DAPTransfer from AT5G58620Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.26833s0388.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0207550.0AB020755.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MZN1.
GenBankAY0541760.0AY054176.1 Arabidopsis thaliana AT5g58620/mzn1_70 mRNA, complete cds.
GenBankAY1033140.0AY103314.1 Arabidopsis thaliana AT5g58620/mzn1_70 mRNA, complete cds.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010483463.10.0PREDICTED: zinc finger CCCH domain-containing protein 66
SwissprotQ9LUZ40.0C3H66_ARATH; Zinc finger CCCH domain-containing protein 66
TrEMBLD7MQF90.0D7MQF9_ARALL; Zinc finger (CCCH-type) family protein
STRINGBostr.26833s0388.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM87726107
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58620.10.0C3H family protein