PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bostr.26833s0357.1.p

Organism

Boechera stricta

Taxonomic ID

72658

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera

Family

M-type_MADS

Protein Properties

Length: 295aa MW: 34349.9 Da PI: 8.9062

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bostr.26833s0357.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	48.4	1.2e-15	10	52	2	44
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44 ri + r +t+ kR++ + KKA E S+LC++e ++i++++t Bostr.26833s0357.1.p 10 RIAKDKTRITTYKKRKANLYKKAAEFSTLCGVETCLIVYGPTK 52 7888999*********************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	15.853	1	61	IPR002100	Transcription factor, MADS-box
SMART	SM00432	2.6E-14	1	60	IPR002100	Transcription factor, MADS-box
CDD	cd00266	4.59E-25	2	81	No hit	No description
PRINTS	PR00404	2.2E-8	3	23	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	9.16E-18	3	88	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.5E-15	10	52	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.2E-8	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.2E-8	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 295 aa Download sequence Send to blast
MTQKKVNLQR IAKDKTRITT YKKRKANLYK KAAEFSTLCG VETCLIVYGP TKATDEVVSE 60 PEIWPRDETK VRDIIRKYKD TVSNSCKKEN HVETFVNDLG KAKEMETNKR VLKSENKYCS 120 WEQTLEKCSR EQLRGIFCAV DNKLHEAVTR QERSMFRVHH QAIDTPVPQS LMDQHYMQQY 180 FSEQPQFQGF PNNYNNMGFS FISPRDDQIQ MDPNLMEDWT NLGFNQGLMM SKGNDGTQLM 240 QRQAQPYYNR ELVVQRSAAY NVNPFAGYQV PFNIPWRLSG NQVEDWDLSG KKPI*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction. {ECO:0000305\|PubMed:26462908}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bostr.26833s0357.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB016885	0.0	AB016885.1 Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K19M22.
GenBank	AB493798	0.0	AB493798.1 Arabidopsis thaliana At5g58890 gene for hypothetical protein, partial cds, clone: RAAt5g58890.
GenBank	CP002688	0.0	CP002688.1 Arabidopsis thaliana chromosome 5 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010483498.1	0.0	PREDICTED: agamous-like MADS-box protein AGL82
Swissprot	Q9FIM0	1e-177	AGL82_ARATH; Agamous-like MADS-box protein AGL82
TrEMBL	R0EZF4	0.0	R0EZF4_9BRAS; Uncharacterized protein
STRING	Bostr.26833s0357.1.p	0.0	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5948	19	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58890.1	1e-179	AGAMOUS-like 82

Link Out ? help Back to Top
Phytozome	Bostr.26833s0357.1.p

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]