PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bostr.26833s0221.2.p

Organism

Boechera stricta

Taxonomic ID

72658

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera

Family

Protein Properties

Length: 295aa MW: 33183.2 Da PI: 4.2665

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bostr.26833s0221.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	37.3	4.9e-12	16	110	1	98
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE...EEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr...yvltkGWkeFvkangLkegDfvvFkldg 86 ffkv + + l lp +f + + +k +++++ g+ W++ + rk+ g+ + + +GWk+ vk+ +Lk g+f+ F +dg Bostr.26833s0221.2.p 16 FFKVY--LPDESGDDLELPISFNSFLP--NSLPKNVIVRSIYGNMWKMAF--RKCCGEverFAIVNGWKRIVKDVDLKGGEFLEFDFDG 98 66776..44455566999999975444..458899*************..666665566************************ PP SSEE..EEEEE- CS B3 87 rsefelvvkvfr 98 +++f++++ ++ Bostr.26833s0221.2.p 99 SRCFNFCIYGRD 110 9*87776665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	2.55E-17	9	112	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	5.7E-14	9	112	IPR015300	DNA-binding pseudobarrel domain
PROSITE profile	PS50863	11.053	14	110	IPR003340	B3 DNA binding domain
CDD	cd10017	2.70E-12	14	107	No hit	No description
Pfam	PF02362	3.4E-10	16	109	IPR003340	B3 DNA binding domain
SMART	SM01019	9.9E-11	16	110	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	3.8E-8	190	290	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	1.96E-10	190	276	IPR015300	DNA-binding pseudobarrel domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 295 aa Download sequence Send to blast
MTMNKGNSSD DCLPKFFKVY LPDESGDDLE LPISFNSFLP NSLPKNVIVR SIYGNMWKMA 60 FRKCCGEVER FAIVNGWKRI VKDVDLKGGE FLEFDFDGSR CFNFCIYGRD TCKKLKSSVQ 120 IKEIENESDG YAGDAAVEEE DNDGDESDDY VVDDAAIEND DDVEAVNLGD DVGDDDDDVD 180 DDDERQYLDD RENPYFTLTL NPKKKSQLLI PARVIKDYGL HFPESITLVD PLVKKVGTLE 240 KQIKIQTNGS VFVKGFGSVI RRNNVKTTDK MICEIKMTGD NNLVQTMKIH IISG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1yel_A	2e-12	6	112	1	104	At1g16640
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bostr.26833s0221.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	DQ056730	1e-133	DQ056730.1 Arabidopsis thaliana transcriptional factor B3 family protein (At5g60130) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023638315.1	1e-138	B3 domain-containing protein At5g60130
Swissprot	Q9LVG1	1e-129	Y5013_ARATH; B3 domain-containing protein At5g60130
TrEMBL	R0GU01	1e-134	R0GU01_9BRAS; Uncharacterized protein
STRING	Bostr.26833s0221.1.p	0.0	(Boechera stricta)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60130.2	1e-127	B3 family protein

Link Out ? help Back to Top
Phytozome	Bostr.26833s0221.2.p

Publications ? help Back to Top
Mantegazza O, et al. Analysis of the arabidopsis REM gene family predicts functions during flower development. Ann. Bot., 2014. 114(7): p. 1507-15 [PMID:25002525]