PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.26833s0221.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family B3
Protein Properties Length: 325aa    MW: 36494.3 Da    PI: 4.0475
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.26833s0221.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3375.9e-1216110198
                           EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE...EEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                    B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr...yvltkGWkeFvkangLkegDfvvFkldg 86 
                           ffkv       + + l lp +f +     +  +k +++++  g+ W++ +  rk+ g+   + + +GWk+ vk+ +Lk g+f+ F +dg
  Bostr.26833s0221.1.p  16 FFKVY--LPDESGDDLELPISFNSFLP--NSLPKNVIVRSIYGNMWKMAF--RKCCGEverFAIVNGWKRIVKDVDLKGGEFLEFDFDG 98 
                           66766..44455566999999975444..458899***************..666665566**************************** PP

                           SSEE..EEEEE- CS
                    B3  87 rsefelvvkvfr 98 
                           +++f++++  ++
  Bostr.26833s0221.1.p  99 SRCFNFCIYGRD 110
                           9***87776665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.14E-179112IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.107.0E-149112IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.05314110IPR003340B3 DNA binding domain
CDDcd100171.70E-1214107No hitNo description
PfamPF023624.1E-1016109IPR003340B3 DNA binding domain
SMARTSM010199.9E-1116110IPR003340B3 DNA binding domain
SuperFamilySSF1019362.35E-10220306IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.7E-8220320IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MTMNKGNSSD DCLPKFFKVY LPDESGDDLE LPISFNSFLP NSLPKNVIVR SIYGNMWKMA  60
FRKCCGEVER FAIVNGWKRI VKDVDLKGGE FLEFDFDGSR CFNFCIYGRD TCKKLKSSVQ  120
IKEIENESDG EEETQASDDV LALDEDDDDS EDSDHNYAEG YAGDAAVEEE DNDGDESDDY  180
VVDDAAIEND DDVEAVNLGD DVGDDDDDVD DDDERQYLDD RENPYFTLTL NPKKKSQLLI  240
PARVIKDYGL HFPESITLVD PLVKKVGTLE KQIKIQTNGS VFVKGFGSVI RRNNVKTTDK  300
MICEIKMTGD NNLVQTMKIH IISG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1yel_A4e-1261121104At1g16640
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.26833s0221.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ0567301e-133DQ056730.1 Arabidopsis thaliana transcriptional factor B3 family protein (At5g60130) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023638315.11e-148B3 domain-containing protein At5g60130
SwissprotQ9LVG11e-134Y5013_ARATH; B3 domain-containing protein At5g60130
TrEMBLR0GU011e-144R0GU01_9BRAS; Uncharacterized protein
STRINGBostr.26833s0221.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49471843
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60130.21e-125B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]