PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.26833s0220.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family B3
Protein Properties Length: 360aa    MW: 41250.7 Da    PI: 4.3154
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.26833s0220.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B338.81.6e-1216108196
                           EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE...EEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                    B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr...yvltkGWkeFvkangLkegDfvvFkldg 86 
                           ffkv       + + l lp +f +   ++k  +k +++++  g+ W++ +  rk+      +++ +GWk+ vk+ +Lk g+f+ F++dg
  Bostr.26833s0220.1.p  16 FFKVH--LPDESGDDLELPITFNSF--LPKSLPKNVIVRSIYGNMWKMAF--RKCCADierFFIVNGWKKIVKDVDLKGGEFLEFEFDG 98 
                           66666..455556669999999743..56779999***************..555544555***************************9 PP

                           SSEE..EEEE CS
                    B3  87 rsefelvvkv 96 
                           +++f++++  
  Bostr.26833s0220.1.p  99 SRCFNFCIYG 108
                           9999766655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019369.42E-1810112IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.1E-1411111IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.4214110IPR003340B3 DNA binding domain
CDDcd100172.78E-1214107No hitNo description
PfamPF023621.2E-1016107IPR003340B3 DNA binding domain
SMARTSM010191.0E-1016110IPR003340B3 DNA binding domain
SuperFamilySSF1019368.83E-9263358IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.0E-5266358IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.039266356IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MTMNKGNSAD DCLPKFFKVH LPDESGDDLE LPITFNSFLP KSLPKNVIVR SIYGNMWKMA  60
FRKCCADIER FFIVNGWKKI VKDVDLKGGE FLEFEFDGSR CFNFCIYGRE TCKKLRSSVQ  120
IKEIEDESDG EDDKHSDDIT VFDDGDGVND DHYYGDEDKS SENIIVLDDD ISDVQDYNEE  180
YTSSEDITVL DEADNDDISD VQDYGEEDTF SEDIIVIDDD DGQDYGDDDN PEDENERTRG  240
VKTERKKKGS SGEHDRQYLD NHMNPFFTVN QHLQIKDNLR IPTKVITNNG LHFPEFINLI  300
DPLKKKCGKL KTKVEGQTIR GFGSIIRRNN VKLTDKVICE LEKEMDGLVR EIKVHVIRG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1yel_A2e-1261121104At1g16640
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.26833s0220.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0266321e-103AB026632.1 Arabidopsis thaliana genomic DNA, chromosome 5, BAC clone:F15L12.
GenBankCP0026881e-103CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006282242.20.0B3 domain-containing protein At5g60142
SwissprotQ9LST31e-160Y5142_ARATH; B3 domain-containing protein At5g60142
TrEMBLR0GS240.0R0GS24_9BRAS; Uncharacterized protein (Fragment)
STRINGBostr.26833s0220.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49471843
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60142.11e-154B3 family protein