PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.26833s0037.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family HSF
Protein Properties Length: 278aa    MW: 31389.8 Da    PI: 7.5089
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.26833s0037.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind118.73.3e-37241152102
                           HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXX CS
          HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgk 90 
                           Fl+k+y+++ed++++++isw+e+g+sf+v+++++fak++Lpk+Fkh+nf+SFvRQLn+YgFkkv  ++         weF++++Fk+g+
  Bostr.26833s0037.1.p  24 FLTKTYNLVEDSSINDVISWNEDGSSFIVWNPTDFAKDLLPKHFKHNNFSSFVRQLNTYGFKKVVPDR---------WEFSNDYFKRGE 103
                           9*****************************************************************99.........************ PP

                           XXXXXXXXXXXX CS
          HSF_DNA-bind  91 kellekikrkks 102
                           k+ll++i+r+k 
  Bostr.26833s0037.1.p 104 KRLLREIQRRKI 115
                           *********985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004156.8E-5620113IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.102.8E-3821113IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467859.52E-3521113IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000564.0E-192447IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.4E-3224113IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.0E-196274IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406387IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.0E-197587IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MNSPPVDAMM TGESSSQRSI PTPFLTKTYN LVEDSSINDV ISWNEDGSSF IVWNPTDFAK  60
DLLPKHFKHN NFSSFVRQLN TYGFKKVVPD RWEFSNDYFK RGEKRLLREI QRRKITTSHQ  120
AVVVPSSEQR IQTTVVSPSN SGEDNNNNNN NQVMSSSPSS WNCQTTTGDG RLSVELLEEN  180
EKLRNQNIQL NRELTQMKSG GSSSQPVEFL PAKRFSDVEV EEEASPRLFG VPIGLKRTRS  240
EGVQVKSVST TAPVGEKSDE ETPWLRHCNR TNQRVCN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d8k_B3e-24241185109Heat shock factor protein 2
5d8l_B3e-24241185109Heat shock factor protein 2
5d8l_D3e-24241185109Heat shock factor protein 2
5d8l_F3e-24241185109Heat shock factor protein 2
5d8l_H3e-24241185109Heat shock factor protein 2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00575DAPTransfer from AT5G62020Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.26833s0037.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4938080.0AB493808.1 Arabidopsis thaliana At5g62020 mRNA for hypothetical protein, partial cds, clone: RAAt5g62020.
GenBankAJ2518670.0AJ251867.1 Arabidopsis thaliana mRNA for heat shock factor 6 (hsf6 gene).
GenBankAK2296900.0AK229690.1 Arabidopsis thaliana mRNA for heat shock factor 6, complete cds, clone: RAFL21-11-D17.
GenBankBT0085420.0BT008542.1 Arabidopsis thaliana clone U51273 putative heat shock factor 6 (At5g62020) mRNA, complete cds.
GenBankBT0086580.0BT008658.1 Arabidopsis thaliana clone RAFL21-11-D17 (R51273) putative heat shock factor 6 (At5g62020) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006280765.21e-169heat stress transcription factor B-2a
SwissprotQ9SCW41e-167HFB2A_ARATH; Heat stress transcription factor B-2a
TrEMBLR0GR581e-168R0GR58_9BRAS; Uncharacterized protein (Fragment)
STRINGBostr.26833s0037.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM96528111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62020.11e-150heat shock transcription factor B2A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]