PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bostr.26833s0027.1.p

Organism

Boechera stricta

Taxonomic ID

72658

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera

Family

G2-like

Protein Properties

Length: 740aa MW: 81680.7 Da PI: 4.6974

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bostr.26833s0027.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	27.3	8.2e-09	1	20	36	55
G2-like 36 mkvkgLtlehvkSHLQkYRl 55 m+v+g+t++hv+SHLQkYR Bostr.26833s0027.1.p 1 MNVDGITRAHVASHLQKYRK 20 9******************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.6E-8	1	25	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 740 aa Download sequence Send to blast
MNVDGITRAH VASHLQKYRK YLKRLKQRAR EAEMSRRAMN TNFASSSYFN PQGSYINTSL 60 NMDNLFQSQL DYGLGQSNLI LNNNNSINYM HHGRPIYDLS QTRSNLLPMG GSLGFFSSVL 120 PLNEERRSVF ATPQVSRVQY GTPNDVLGMN SNRGTGYMRS NYAGISIDAN GNLVGLGGAR 180 VNGNGNGSLG ESFGAMNWNF NNNNMSNHGR STLRVPSTFS SSLANEGQTQ SNLIAQMDGG 240 VPRSIFETSQ IPRFGQYGTT NDVYYDGINT NEYGDLIGLG GARGKGNVNG SLGENVGTMN 300 WNFNNNNMTN HGSSNSRFSS PFSSFFVNED QSQSNLNAQT DGLVPRQENL SMCNYHHDIG 360 NTINSQFDQN QHQGQVSAGV PKLSNDVLLE RNAISNWNFN NQHQGQVSAA NPKLSNDVLL 420 ERNAISNWNF DNHQGQASAG NLELSNDVFL ERDAINNWSF DNHQGQVSAG NPELSNDVLL 480 ERNAISNWSF NNHHGQVSAG GNPKLSNDIL HEKNAINNWS FDNHQGQVSA GNPELSNDVL 540 LEKNAVNNWS FNNASQVNAG NSELANDVLL ERNAISNWSF DNHQGQINVE KLELANDVLF 600 EKNATSNWNF GNHQGQVNAG NSELANDVLL ERNAIRNWSF DNQHQGQMNA GNPELGNNVL 660 FERNATSNWN FGNVNDNPNE EMLNSIAANS EMYIPTPDMN TINQEQGVAD LAEFPWLPMD 720 PDGIDGDFMN YMLDDDVML*

Sequence ? help Back to Top

Protein Sequence Length: 740 aa Download sequence Send to blast

MNVDGITRAH VASHLQKYRK YLKRLKQRAR EAEMSRRAMN TNFASSSYFN PQGSYINTSL  60
NMDNLFQSQL DYGLGQSNLI LNNNNSINYM HHGRPIYDLS QTRSNLLPMG GSLGFFSSVL  120
PLNEERRSVF ATPQVSRVQY GTPNDVLGMN SNRGTGYMRS NYAGISIDAN GNLVGLGGAR  180
VNGNGNGSLG ESFGAMNWNF NNNNMSNHGR STLRVPSTFS SSLANEGQTQ SNLIAQMDGG  240
VPRSIFETSQ IPRFGQYGTT NDVYYDGINT NEYGDLIGLG GARGKGNVNG SLGENVGTMN  300
WNFNNNNMTN HGSSNSRFSS PFSSFFVNED QSQSNLNAQT DGLVPRQENL SMCNYHHDIG  360
NTINSQFDQN QHQGQVSAGV PKLSNDVLLE RNAISNWNFN NQHQGQVSAA NPKLSNDVLL  420
ERNAISNWNF DNHQGQASAG NLELSNDVFL ERDAINNWSF DNHQGQVSAG NPELSNDVLL  480
ERNAISNWSF NNHHGQVSAG GNPKLSNDIL HEKNAINNWS FDNHQGQVSA GNPELSNDVL  540
LEKNAVNNWS FNNASQVNAG NSELANDVLL ERNAISNWSF DNHQGQINVE KLELANDVLF  600
EKNATSNWNF GNHQGQVNAG NSELANDVLL ERNAIRNWSF DNQHQGQMNA GNPELGNNVL  660
FERNATSNWN FGNVNDNPNE EMLNSIAANS EMYIPTPDMN TINQEQGVAD LAEFPWLPMD  720
PDGIDGDFMN YMLDDDVML*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bostr.26833s0027.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019095677.1	1e-169	PREDICTED: uncharacterized protein DDB_G0283357-like
TrEMBL	R0F0J2	1e-133	R0F0J2_9BRAS; Uncharacterized protein (Fragment)
STRING	Bostr.26833s0027.1.p	0.0	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM17441	7	9

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G62110.1	2e-63	G2-like family protein

Link Out ? help Back to Top
Phytozome	Bostr.26833s0027.1.p