PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT5G62110.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | G2-like | ||||||||
Protein Properties | Length: 673aa MW: 74749.2 Da PI: 3.8893 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 23.5 | 1.3e-07 | 1 | 21 | 36 | 56 |
G2-like 36 mkvkgLtlehvkSHLQkYRla 56 m+v+g+t+++++SHLQkYR + AT5G62110.1 1 MNVEGITRSQIASHLQKYRKH 21 9******************75 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 6.9E-7 | 1 | 24 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 673 aa Download sequence Send to blast |
MNVEGITRSQ IASHLQKYRK HMRRFKVNVT KADISKKAMK SNFESSSNIN PQCSYNYLGL 60 TKENLFKSQI GDTLGQSSLL LNNNDSIHSM YDGSIYGLNE PESNLSPMRE SVGFSRGVLP 120 LNEESECAFE TSQMSQVPRR GQYGTPSDIS VDSNGNGHLG ESLGAMNWNL NNNDVRNYES 180 STSRFSSPFS SFLHNKVQPH HNLISQTDGL LSTSILDTSQ VPSFGQYGIP NDVVGMEPEF 240 GTSYMHSNYN GINTDQVGNL VGLGRERVNV NGNVSLGQNL GSMNWNFDEN NMSNHGSSTS 300 RFSSPFSSFE DQSLSHLNEE TNELVPGLEN LSLYNDHQSI NPFLGNTINS HFVENQDQGL 360 VNNENLEFAN DDQLERNEIL TTYSVEDINN LSINNVKLNS NGETLNSTAA NLEMLFPTLD 420 MNIVNQHQGQ VLSGGNLEFA NDNQLERNAI LAGYSIEDIN NLSINNHQGQ VLSGVNFEFA 480 NDNQFERNAI LAGYSIEDIN NLSINNVNDN SNEETLNSIA ANNEMNFTIL DVNTINQVNG 540 NSNEETLNSI VANSEINFTT LDVNTINQVD NNFNEETLNS IAANSEMNFT TLDVNIINEE 600 EQGAVDMMDI VITFDEEEED VAALTDIPEQ DVEILTDVPE QGVTDLTDVP LTFDQDWKDD 660 GLMNFMLDVD DMF |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 186532661 | 0.0 | ||||
Genevisible | 247484_at | 0.0 | ||||
Expression Atlas | AT5G62110 | - | ||||
AtGenExpress | AT5G62110 | - | ||||
ATTED-II | AT5G62110 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT5G62110.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT5G62110 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB016880 | 0.0 | AB016880.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MTG10. | |||
GenBank | CP002688 | 0.0 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_201017.3 | 0.0 | Homeodomain-like superfamily protein | ||||
TrEMBL | Q9FIS7 | 0.0 | Q9FIS7_ARATH; Uncharacterized protein | ||||
STRING | AT5G62110.1 | 0.0 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM17441 | 7 | 9 |
Link Out ? help Back to Top | |
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Phytozome | AT5G62110.1 |
Entrez Gene | 836331 |
iHOP | AT5G62110 |
wikigenes | AT5G62110 |