PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bostr.26675s0388.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
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Family | ERF | ||||||||
Protein Properties | Length: 187aa MW: 20079.3 Da PI: 4.7164 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 61.1 | 2.5e-19 | 25 | 74 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr ++ +g+++AeIrdp++ + r +lg+f+tae+Aa+a++ a+++++g Bostr.26675s0388.1.p 25 HYRGVRKRP-WGKYAAEIRDPRK---KNRLWLGTFDTAEDAARAYDSAAREFRG 74 6********.**********854...59***********************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 3.63E-32 | 25 | 82 | No hit | No description |
SMART | SM00380 | 6.6E-37 | 25 | 88 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.37E-22 | 25 | 83 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 24.263 | 25 | 82 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 9.3E-13 | 25 | 74 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.3E-32 | 25 | 82 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.9E-11 | 26 | 37 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.9E-11 | 48 | 64 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 187 aa Download sequence Send to blast |
MTPHEQENVT NAAVKDGGGK SEEVHYRGVR KRPWGKYAAE IRDPRKKNRL WLGTFDTAED 60 AARAYDSAAR EFRGSKATTN FPLAGDGGNA SATSVNSTLS ATERERIFSS GCQNVLSPAV 120 AEAVAGFLLD LPEATELREE LDRVCPVRFE PNDLGLCIGL QTAVEVEPEA SSAVDCKLNL 180 DLNLGP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 8e-24 | 25 | 88 | 5 | 69 | ATERF1 |
3gcc_A | 8e-24 | 25 | 88 | 5 | 69 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Acts as a transcriptional inhibitor and may regulate other AtERFs (By similarity). {ECO:0000250, ECO:0000269|PubMed:11487705}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00124 | DAP | Transfer from AT1G03800 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bostr.26675s0388.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010482529.1 | 1e-79 | PREDICTED: ethylene-responsive transcription factor 10-like | ||||
Swissprot | Q9ZWA2 | 1e-76 | ERF77_ARATH; Ethylene-responsive transcription factor 10 | ||||
TrEMBL | A0A384KN67 | 3e-74 | A0A384KN67_ARATH; ERF10 | ||||
TrEMBL | Q08A59 | 3e-74 | Q08A59_ARATH; At1g03800 | ||||
STRING | Bostr.26675s0388.1.p | 1e-134 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G03800.1 | 3e-70 | ERF domain protein 10 |
Link Out ? help Back to Top | |
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Phytozome | Bostr.26675s0388.1.p |
Publications ? help Back to Top | |||
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