PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bostr.26675s0224.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
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Family | B3 | ||||||||
Protein Properties | Length: 180aa MW: 20642.4 Da PI: 5.1997 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 43 | 7.9e-14 | 31 | 120 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 ffk+ + ++ k++++ +p +++ + g ++ + +++e++ g + ++++ ++ +++++++kGW+eF++a+ L eg f+ F+++g+s+ Bostr.26675s0224.1.p 31 FFKII-HLSTIKEKIMKVPARYV-RLG--PKLTDNVSVETPVGFKRSIRI--KRIGDEVWFEKGWSEFAEAHSLSEGHFLFFHYEGKSS 113 55655.889999999*******9.555..446679***************..*********************************9999 PP E..EEEEE- CS B3 90 felvvkvfr 98 f +v +++ Bostr.26675s0224.1.p 114 F--RVVICD 120 9..888887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 2.75E-17 | 26 | 120 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 7.5E-17 | 28 | 120 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 10.419 | 30 | 122 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 6.4E-13 | 31 | 122 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.5E-11 | 31 | 120 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 4.17E-13 | 31 | 120 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 180 aa Download sequence Send to blast |
MPNTRRSSVR ITSAASQRRL EPEPEPAVNK FFKIIHLSTI KEKIMKVPAR YVRLGPKLTD 60 NVSVETPVGF KRSIRIKRIG DEVWFEKGWS EFAEAHSLSE GHFLFFHYEG KSSFRVVICD 120 VTASEIKYPL DKVYVIESDD DKEEVMEVVD DDEQGFAGFE SSEDEGVIDL DELLKKKKPT |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bostr.26675s0224.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC007504 | 9e-73 | AC007504.3 Arabidopsis thaliana chromosome I BAC F13F21 genomic sequence, complete sequence. | |||
GenBank | CP002684 | 9e-73 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010500489.1 | 1e-107 | PREDICTED: B3 domain-containing protein At1g49475-like | ||||
Swissprot | Q9XIB4 | 5e-88 | Y1475_ARATH; B3 domain-containing protein At1g49475 | ||||
TrEMBL | A0A178WDC1 | 2e-86 | A0A178WDC1_ARATH; Uncharacterized protein | ||||
STRING | Bostr.26675s0224.1.p | 1e-128 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1591 | 25 | 78 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G49475.1 | 9e-82 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Bostr.26675s0224.1.p |
Publications ? help Back to Top | |||
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