PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bostr.26675s0197.2.p

Organism

Boechera stricta

Taxonomic ID

72658

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera

Family

bZIP

Protein Properties

Length: 400aa MW: 44063 Da PI: 9.9426

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bostr.26675s0197.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	43.9	5e-14	320	378	5	62
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH.HHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL.kkeleelkkevaklkse 62 +r++r++kNRe+A rsR+RK+a++ eLe ++++L++ N++L +k+++ +k + ++lk + Bostr.26675s0197.2.p 320 RRQKRMIKNRESAARSRARKQAYTLELEAEIESLKQLNQDLqRKQADVMKTQNSELKES 378 79***************************************557788888888888876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF81995	6.02E-5	204	258	No hit	No description
SMART	SM00338	1.5E-13	316	381	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.346	318	382	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	6.75E-10	320	369	No hit	No description
CDD	cd14707	7.43E-22	320	364	No hit	No description
Gene3D	G3DSA:1.20.5.170	1.9E-14	320	380	No hit	No description
Pfam	PF00170	7.8E-12	320	378	IPR004827	Basic-leucine zipper domain
PROSITE pattern	PS00036	0	323	338	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009737	Biological Process	response to abscisic acid
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 400 aa Download sequence Send to blast
MGTRIDFDNL GGDSNQSKPL ARQSSLYSLT FDELQSTLGE PGKDFGSMNF DELLKNIWTA 60 EETQAFMTTP SSVAPVGPSG CIPGGNVLQR QGSLTLPRTL SQKTVDEVWK HLNSKDGSNG 120 NSRTDVPERQ QTLGEMTLED FLLRAGVVKE DNNSTQQNEN GFYANNGAAG LGFGFGQPNQ 180 NSISFKGNNN SVILNKAPGL GLEVGGTMQQ QQQQSHQRQQ QQQQPHQRQQ QQQSHQRLRP 240 NIFPKQANVT FAPVNMVNRS LFEAGVDGPV NSNMGGAGVT VAATSPGTSS AENNTWSSPV 300 PYVFSRGRRN NMGLEKVVER RQKRMIKNRE SAARSRARKQ AYTLELEAEI ESLKQLNQDL 360 QRKQADVMKT QNSELKESLK QPPCLAKTQC LRRTLTGPW*

Sequence ? help Back to Top

Protein Sequence Length: 400 aa Download sequence Send to blast

MGTRIDFDNL GGDSNQSKPL ARQSSLYSLT FDELQSTLGE PGKDFGSMNF DELLKNIWTA  60
EETQAFMTTP SSVAPVGPSG CIPGGNVLQR QGSLTLPRTL SQKTVDEVWK HLNSKDGSNG  120
NSRTDVPERQ QTLGEMTLED FLLRAGVVKE DNNSTQQNEN GFYANNGAAG LGFGFGQPNQ  180
NSISFKGNNN SVILNKAPGL GLEVGGTMQQ QQQQSHQRQQ QQQQPHQRQQ QQQSHQRLRP  240
NIFPKQANVT FAPVNMVNRS LFEAGVDGPV NSNMGGAGVT VAATSPGTSS AENNTWSSPV  300
PYVFSRGRRN NMGLEKVVER RQKRMIKNRE SAARSRARKQ AYTLELEAEI ESLKQLNQDL  360
QRKQADVMKT QNSELKESLK QPPCLAKTQC LRRTLTGPW*

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the ABA-responsive element (ABRE). Could participate in abscisic acid-regulated gene expression.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00087	SELEX	Transfer from AT1G49720	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bostr.26675s0197.2.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by abscisic acid (ABA) and cold. {ECO:0000269\|PubMed:10636868}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF093544	1e-176	AF093544.1 Arabidopsis thaliana clone 1 abscisic acid responsive elements-binding factor (ABRE) mRNA, complete cds.
GenBank	AK226983	1e-176	AK226983.1 Arabidopsis thaliana mRNA for abscisic acid responsive elements-binding factor, complete cds, clone: RAFL09-41-C22.
GenBank	BT008575	1e-176	BT008575.1 Arabidopsis thaliana clone U19471 putative abscisic acid responsive elements-binding factor (At1g49720) mRNA, complete cds.
GenBank	BT008647	1e-176	BT008647.1 Arabidopsis thaliana clone RAFL09-77-C02 (R19471) putative abscisic acid responsive elements-binding factor (At1g49720) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010479441.1	0.0	PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 4 isoform X1
Swissprot	Q9M7Q5	0.0	AI5L4_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 4
TrEMBL	A0A178WH34	0.0	A0A178WH34_ARATH; AtABF1
STRING	Bostr.26675s0197.1.p	0.0	(Boechera stricta)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G49720.1	0.0	abscisic acid responsive element-binding factor 1

Link Out ? help Back to Top
Phytozome	Bostr.26675s0197.2.p

Publications ? help Back to Top
Fernando VCD,Al Khateeb W,Belmonte MF,Schroeder DF Role of Arabidopsis ABF1/3/4 during det1 germination in salt and osmotic stress conditions. Plant Mol. Biol., 2018. 97(1-2): p. 149-163 [PMID:29680877]