PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.26675s0076.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family RAV
Protein Properties Length: 356aa    MW: 40492.6 Da    PI: 7.8968
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.26675s0076.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP234.26.2e-114794154
                   AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54
                          ++ykGV +   +g W A+I+       ++r++lg+f +a eAa+a++ a  kl+
  Bostr.26675s0076.1.p 47 TKYKGVVQQQ-NGHWGAQIYAD-----HRRIWLGTFKSAAEAAAAYDSASIKLR 94
                          69****9888.8******9993.....4*********************99997 PP
2B391.37.2e-29180276185
                           EEEE-..-HHHHTT-EE--HHH.HTT............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT CS
                    B3   1 ffkvltpsdvlksgrlvlpkkfaeeh............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkeg 77 
                           f+k+ltpsdv+k++rlv+pkk+a ++            +g+  e+++++++d+  r+W+++++y+++s+++v+t+GW++Fvk+++Lke+
  Bostr.26675s0076.1.p 180 FQKELTPSDVGKLNRLVIPKKYAVKYmpfisddqnekeMGEGVEDVEVVFYDRAMRQWKFRYCYWRSSQSFVFTRGWNGFVKEKNLKEK 268
                           99*****************************98766663333399******************************************** PP

                           -EEEEEE- CS
                    B3  78 DfvvFkld 85 
                           D++vF+  
  Bostr.26675s0076.1.p 269 DVIVFYTC 276
                           *****943 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.78E-1147107No hitNo description
PROSITE profilePS5103217.17448105IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-1448106IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.9E-1648105IPR001471AP2/ERF domain
SMARTSM003802.1E-1548111IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.103.5E-32175275IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.22E-27178276IPR015300DNA-binding pseudobarrel domain
CDDcd100171.06E-25179274No hitNo description
SMARTSM010193.4E-22180291IPR003340B3 DNA binding domain
PfamPF023626.3E-26180277IPR003340B3 DNA binding domain
PROSITE profilePS5086312.337180290IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MNAMSNEAKT TTETSGSSDS ILHLTKRMKP TVVMTTKPAL SNTATTTKYK GVVQQQNGHW  60
GAQIYADHRR IWLGTFKSAA EAAAAYDSAS IKLRSFDANS NRNFPWSDFT VHEPDFQECY  120
TTEAVLNMIR DGSYQHKFRD FLRIRSQIVA SINIVGSKQV RGGGEGDQES NKCFSCTQLF  180
QKELTPSDVG KLNRLVIPKK YAVKYMPFIS DDQNEKEMGE GVEDVEVVFY DRAMRQWKFR  240
YCYWRSSQSF VFTRGWNGFV KEKNLKEKDV IVFYTCDVPS NVKTLEGQSK NFLMIDVHYF  300
SGNGFMVPEE VNKTAHESSD EEMKTGNVFS SKLEDDETKS EEKKGGFMLF GVRIQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A3e-2517927313100DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.26675s0076.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0798280.0AC079828.4 Arabidopsis thaliana chromosome 1 BAC F23H24 genomic sequence, complete sequence.
GenBankAY5608830.0AY560883.1 Arabidopsis thaliana putative AP2/EREBP transcription factor (At1g51120) mRNA, complete cds.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002891618.20.0AP2/ERF and B3 domain-containing transcription factor At1g51120
SwissprotQ9C6880.0RAVL3_ARATH; AP2/ERF and B3 domain-containing transcription factor At1g51120
TrEMBLD7KHN00.0D7KHN0_ARALL; Uncharacterized protein
STRINGBostr.26675s0076.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17052788
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51120.10.0RAV family protein