PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bostr.26527s0039.1.p

Organism

Boechera stricta

Taxonomic ID

72658

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera

Family

NAC

Protein Properties

Length: 237aa MW: 26932.2 Da PI: 5.8326

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bostr.26527s0039.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	134.5	7.4e-42	6	137	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWka 85 + GfrF Pt++elv++yL++++eg++ ++++vi+ +d+++veP++Lp+ +++++ ++w+fF++r++++a+g r++r+t sgyWka Bostr.26527s0039.1.p 6 TIGFRFYPTEDELVSFYLRNQLEGRSdASVHRVIPVLDVFEVEPSHLPNlageRCRGDAEQWFFFVPRQEREARGGRPSRTTGSGYWKA 94 57********************996677788**********9656766667888************************* PP NAM 86 tgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 tg+ +v+sk+++ +g+kkt+vfy+ +ap+g+kt+W m+ey++ Bostr.26527s0039.1.p 95 TGSPGPVFSKDNRMIGVKKTMVFYTRKAPTGRKTKWKMNEYKA 137 ***************************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	8.37E-46	5	162	IPR003441	NAC domain
PROSITE profile	PS51005	45.703	5	162	IPR003441	NAC domain
Pfam	PF02365	6.2E-23	7	136	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 237 aa Download sequence Send to blast
MADEVTIGFR FYPTEDELVS FYLRNQLEGR SDASVHRVIP VLDVFEVEPS HLPNLAGERC 60 RGDAEQWFFF VPRQEREARG GRPSRTTGSG YWKATGSPGP VFSKDNRMIG VKKTMVFYTR 120 KAPTGRKTKW KMNEYKAVDE TVNASTIPKW RHEFSLCRVY ITTGSSRAFD RRPVGDLQTE 180 RMLTSDVAVA ETSSFRVESP PETSISGGEY VDLSMNTELI DGLTEPNWDW EQLSWP*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	2e-30	8	167	23	173	NAC domain-containing protein 19
3swm_B	2e-30	8	167	23	173	NAC domain-containing protein 19
3swm_C	2e-30	8	167	23	173	NAC domain-containing protein 19
3swm_D	2e-30	8	167	23	173	NAC domain-containing protein 19
3swp_A	2e-30	8	167	23	173	NAC domain-containing protein 19
3swp_B	2e-30	8	167	23	173	NAC domain-containing protein 19
3swp_C	2e-30	8	167	23	173	NAC domain-containing protein 19
3swp_D	2e-30	8	167	23	173	NAC domain-containing protein 19
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bostr.26527s0039.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK175806	0.0	AK175806.1 Arabidopsis thaliana mRNA for NAC-domain protein-like, complete cds, clone: RAFL22-40-G20.
GenBank	AY086944	0.0	AY086944.1 Arabidopsis thaliana clone 29829 mRNA, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002874067.1	1e-157	NAC domain-containing protein 90
Swissprot	Q9FMR3	1e-156	NAC90_ARATH; NAC domain-containing protein 90
TrEMBL	D7M0X0	1e-156	D7M0X0_ARALL; ANAC090
STRING	Bostr.26527s0039.1.p	1e-175	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1445	28	93

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G22380.1	1e-147	NAC domain containing protein 90

Link Out ? help Back to Top
Phytozome	Bostr.26527s0039.1.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]