PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.26527s0018.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family WRKY
Protein Properties Length: 292aa    MW: 33255.6 Da    PI: 5.9113
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.26527s0018.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY62.38.6e-20112171359
                           -SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                  WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                           Dgy WrKYGqK +k+s++ rsYYrC+++   +C ++k+ ++ +++p v  +tY g+H+++
  Bostr.26527s0018.1.p 112 DGYLWRKYGQKCIKKSDHQRSYYRCSYNidhNCGARKHEQKIKDNPPVYRTTYFGQHTCK 171
                           9**************************9999***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.3E-21104172IPR003657WRKY domain
PROSITE profilePS5081119.611105173IPR003657WRKY domain
SuperFamilySSF1182901.57E-20108172IPR003657WRKY domain
SMARTSM007742.1E-28110172IPR003657WRKY domain
PfamPF031065.6E-20112171IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009863Biological Processsalicylic acid mediated signaling pathway
GO:0042742Biological Processdefense response to bacterium
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MEMNCPHEKA VQSILYGHSC AMRLKMRLEH SMADSGPVSS YDLAISIVDC FSNAIAILSY  60
KPKSEDDQSS DLSSRDPSPP PPQGSHSKKR KIDNTNSSAN WRDDSPDPIY YDGYLWRKYG  120
QKCIKKSDHQ RSYYRCSYNI DHNCGARKHE QKIKDNPPVY RTTYFGQHTC KTNHNLDSIF  180
AAVQDPVDDL KSAQMIRFGK DLDQEMKSHS SGFSLSVKHE EDIIREQNMD QYRDITSDYQ  240
DCQHVMKEDL SSPSGSYPPP SSSSGSESAE FNSDLLFDNP ASWDCFDQFY F*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A3e-141121711069OsWRKY45
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00619PBMTransfer from AT5G22570Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.26527s0018.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1188840.0AK118884.1 Arabidopsis thaliana At5g22570 mRNA for putative WRKY transcription factor 38 (WRKY38), complete cds, clone: RAFL21-21-O16.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002874078.11e-161probable WRKY transcription factor 38
SwissprotQ8GWF11e-151WRK38_ARATH; Probable WRKY transcription factor 38
TrEMBLD7M0Z01e-160D7M0Z0_ARALL; WRKY DNA-binding protein 38
STRINGBostr.26527s0018.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM136731727
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22570.11e-143WRKY DNA-binding protein 38
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Singh V,Roy S,Singh D,Nandi AK
    Arabidopsis flowering locus D influences systemic-acquired-resistance- induced expression and histone modifications of WRKY genes.
    J. Biosci., 2014. 39(1): p. 119-26
    [PMID:24499796]
  3. Janda M, et al.
    Phospholipase D affects translocation of NPR1 to the nucleus in Arabidopsis thaliana.
    Front Plant Sci, 2015. 6: p. 59
    [PMID:25741350]