PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bostr.26326s0009.1.p

Organism

Boechera stricta

Taxonomic ID

72658

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera

Family

M-type_MADS

Protein Properties

Length: 185aa MW: 21757.7 Da PI: 9.9521

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bostr.26326s0009.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	51.4	1.4e-16	9	53	1	45
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 krie r+ +skR++gilKKAeEL LCd++++++++s+t+k Bostr.26326s0009.1.p 9 KRIECPKERSSKYSKRKKGILKKAEELALLCDVDILMVLVSPTDK 53 68999999**********************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	21.39	1	61	IPR002100	Transcription factor, MADS-box
SMART	SM00432	1.6E-23	1	60	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	4.19E-21	2	80	IPR002100	Transcription factor, MADS-box
CDD	cd00120	4.13E-18	2	59	No hit	No description
PRINTS	PR00404	2.2E-13	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	2.3E-16	10	56	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.2E-13	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.2E-13	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 185 aa Download sequence Send to blast
MGRKKIELKR IECPKERSSK YSKRKKGILK KAEELALLCD VDILMVLVSP TDKPTLFHTR 60 SRSLIQILKE FCKTSLPERE ERRAYTIKML KKLVCKNNTE VPIEIDHLPP ERDDVIQDDK 120 KVTELREAKE LLDEKKLILE DWKNPDKVND WGRLNIMEKY LVSSLSYIRN ILKVKIQEKQ 180 QTLI*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bostr.26326s0009.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010417420.1	4e-94	PREDICTED: agamous-like MADS-box protein AGL65
TrEMBL	A0A0D3DVC8	5e-55	A0A0D3DVC8_BRAOL; Uncharacterized protein
TrEMBL	A0A3P6FYD8	4e-55	A0A3P6FYD8_BRAOL; Uncharacterized protein
STRING	Bostr.26326s0009.1.p	1e-128	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7330	18	38

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G26320.1	2e-27	AGAMOUS-like 33

Link Out ? help Back to Top
Phytozome	Bostr.26326s0009.1.p