PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bostr.25993s0590.1.p

Organism

Boechera stricta

Taxonomic ID

72658

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera

Family

C3H

Protein Properties

Length: 713aa MW: 77492.4 Da PI: 6.4545

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bostr.25993s0590.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	22.3	2.3e-07	305	325	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C++f++ G C++Gd C +aHg Bostr.25993s0590.1.p 305 PCPDFRK-GACRRGDMCEYAHG 325 8****.***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF48403	5.13E-17	39	182	IPR020683	Ankyrin repeat-containing domain
Gene3D	G3DSA:1.25.40.20	4.7E-18	41	184	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	6.60E-15	47	181	No hit	No description
Pfam	PF12796	1.1E-10	84	157	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50297	17.051	89	192	IPR020683	Ankyrin repeat-containing domain
SMART	SM00248	0.0078	89	119	IPR002110	Ankyrin repeat
PRINTS	PR01415	3.7E-5	90	105	IPR002110	Ankyrin repeat
PROSITE profile	PS50088	12.476	124	159	IPR002110	Ankyrin repeat
SMART	SM00248	0.0039	124	156	IPR002110	Ankyrin repeat
PRINTS	PR01415	3.7E-5	143	157	IPR002110	Ankyrin repeat
SMART	SM00356	4.0E-6	300	326	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	6.3E-5	305	325	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.582	305	327	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	6.1E-4	305	327	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	68	335	358	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	6.963	335	359	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0005737	Cellular Component	cytoplasm
GO:0005515	Molecular Function	protein binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 713 aa Download sequence Send to blast
MCCGSDRLNQ IVSSRSSSPV SFKDNNLVTN TDMNHLRVET EDTFASLLEL AANNDVEGVR 60 LSIERDPSCV DEAGLWYGRQ KGSKAMVNDQ RTPLMVAATY GSIDVIKLIV SLTDANVNRA 120 CGNDQTTALH CAASGGAVNA IQVVKLLLAA GADLNLLDAE GQRPGDVIVV PPKLEGVKLM 180 LQELLSADGS STAERNLRVV TNVPNKSSSP SHSPTGENDG SGSGSPLGSP FKLKSTEFKK 240 EYPVDPSLPD IKNSIYATDE FRMYSFKVRP CSRAYSHDWT ECPFVHPGEN ARRRDPRKFH 300 YSCVPCPDFR KGACRRGDMC EYAHGVFECW LHPAQYRTRL CKDGTGCARR VCFFAHTPEE 360 LRPLYASTGS AVPSPRSNAD YAAALSLLPG SPSGVSVMSP LSPSAAGNGM SHSNMAWPQP 420 NVPALHLPGS NLQSSRLRSS LNARDIPTDE FNMLADYDQQ QLLNEYSNSL SRSGRMKSMP 480 PSNLEDLFSA EGSSSPRFTD SALASAVFSP THKSAVFNQF QQQQQQSMLS PINTSFSSPV 540 SVDHSLFSSG GRMSPRNVVE PISPMSSRVS MLAQCVKQQQ QQQQQQQQQH QFRSLSSREL 600 RTNSSPIVGS PVNNNSWSSK WGSSNGQPDW GMSSEALGKL RSSSSFDGDE PDVSWVQSLV 660 KESPTDAKEK AATSSSGEDV KQPNPIEPVM DHAGLEAWIE QMQLDQLVAQ QN*

Sequence ? help Back to Top

Protein Sequence Length: 713 aa Download sequence Send to blast

MCCGSDRLNQ IVSSRSSSPV SFKDNNLVTN TDMNHLRVET EDTFASLLEL AANNDVEGVR  60
LSIERDPSCV DEAGLWYGRQ KGSKAMVNDQ RTPLMVAATY GSIDVIKLIV SLTDANVNRA  120
CGNDQTTALH CAASGGAVNA IQVVKLLLAA GADLNLLDAE GQRPGDVIVV PPKLEGVKLM  180
LQELLSADGS STAERNLRVV TNVPNKSSSP SHSPTGENDG SGSGSPLGSP FKLKSTEFKK  240
EYPVDPSLPD IKNSIYATDE FRMYSFKVRP CSRAYSHDWT ECPFVHPGEN ARRRDPRKFH  300
YSCVPCPDFR KGACRRGDMC EYAHGVFECW LHPAQYRTRL CKDGTGCARR VCFFAHTPEE  360
LRPLYASTGS AVPSPRSNAD YAAALSLLPG SPSGVSVMSP LSPSAAGNGM SHSNMAWPQP  420
NVPALHLPGS NLQSSRLRSS LNARDIPTDE FNMLADYDQQ QLLNEYSNSL SRSGRMKSMP  480
PSNLEDLFSA EGSSSPRFTD SALASAVFSP THKSAVFNQF QQQQQQSMLS PINTSFSSPV  540
SVDHSLFSSG GRMSPRNVVE PISPMSSRVS MLAQCVKQQQ QQQQQQQQQH QFRSLSSREL  600
RTNSSPIVGS PVNNNSWSSK WGSSNGQPDW GMSSEALGKL RSSSSFDGDE PDVSWVQSLV  660
KESPTDAKEK AATSSSGEDV KQPNPIEPVM DHAGLEAWIE QMQLDQLVAQ QN*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bostr.25993s0590.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY037232	0.0	AY037232.1 Arabidopsis thaliana At2g41900/T6D20.20 mRNA, complete cds.
GenBank	AY093957	0.0	AY093957.1 Arabidopsis thaliana At2g41900/T6D20.20 mRNA, complete cds.
GenBank	CP002685	0.0	CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
GenBank	U90439	0.0	U90439.3 Arabidopsis thaliana chromosome 2 BAC T6D20 genomic sequence, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_565962.1	0.0	CCCH-type zinc finger protein with ARM repeat domain-containing protein
Swissprot	P93755	0.0	C3H30_ARATH; Zinc finger CCCH domain-containing protein 30
TrEMBL	A0A178VPY5	0.0	A0A178VPY5_ARATH; OXS2
STRING	Bostr.25993s0590.1.p	0.0	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1785	28	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41900.1	0.0	CCCH-type zinc finger protein with ARM repeat domain

Link Out ? help Back to Top
Phytozome	Bostr.25993s0590.1.p

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] He L, et al. Maize OXIDATIVE STRESS2 Homologs Enhance Cadmium Tolerance in Arabidopsis through Activation of a Putative SAM-Dependent Methyltransferase Gene. Plant Physiol., 2016. 171(3): p. 1675-85 [PMID:27208260]