PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bostr.2570s0302.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
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Family | NAC | ||||||||
Protein Properties | Length: 340aa MW: 37879.6 Da PI: 6.5733 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 174.7 | 2.6e-54 | 20 | 146 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 lppGfrFhPtdee++++yLk+kv + ++++ +i ++d++k ePwdLpk +k +eke yfF++rd+ky+tg r+nrat sgyWkatgkdk Bostr.2570s0302.1.p 20 LPPGFRFHPTDEEIITHYLKEKVFNIRFTA-AAIGQADLNKNEPWDLPKIAKMGEKEFYFFCQRDRKYPTGMRTNRATVSGYWKATGKDK 108 79*************************999.78***************8888899*********************************** PP NAM 91 evlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 e+++ kg lvg+kktLvfy+grapkgekt+Wvmheyrl Bostr.2570s0302.1.p 109 EIFRGKGCLVGMKKTLVFYRGRAPKGEKTNWVMHEYRL 146 ****9*******************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.53E-62 | 17 | 172 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 58.234 | 20 | 171 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.0E-28 | 21 | 146 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:1900057 | Biological Process | positive regulation of leaf senescence | ||||
GO:1903648 | Biological Process | positive regulation of chlorophyll catabolic process | ||||
GO:0000975 | Molecular Function | regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 340 aa Download sequence Send to blast |
MVEGGGVVVN QGGDQEVVDL PPGFRFHPTD EEIITHYLKE KVFNIRFTAA AIGQADLNKN 60 EPWDLPKIAK MGEKEFYFFC QRDRKYPTGM RTNRATVSGY WKATGKDKEI FRGKGCLVGM 120 KKTLVFYRGR APKGEKTNWV MHEYRLDGKY SYHNLPKTAR DEWVVCRVFH KNAPTTTITT 180 TNQLSRIDSL DNIDHLLDFS SLPPLIDPGF LIQPSPSFTG AGQDLKPVLH HPTTALVENT 240 YLPTHTHNFP HSVHNFGSDS GYGAGSDNNN NGMIKLEHSL VSVSQETGLS SDVNTTATPE 300 ISSYPLMMNP AADAATMNGS KSACDDLDDL IFWEDLYTR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 9e-51 | 18 | 173 | 15 | 167 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 9e-51 | 18 | 173 | 15 | 167 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 9e-51 | 18 | 173 | 15 | 167 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 9e-51 | 18 | 173 | 15 | 167 | NO APICAL MERISTEM PROTEIN |
3swm_A | 1e-50 | 18 | 173 | 18 | 170 | NAC domain-containing protein 19 |
3swm_B | 1e-50 | 18 | 173 | 18 | 170 | NAC domain-containing protein 19 |
3swm_C | 1e-50 | 18 | 173 | 18 | 170 | NAC domain-containing protein 19 |
3swm_D | 1e-50 | 18 | 173 | 18 | 170 | NAC domain-containing protein 19 |
3swp_A | 1e-50 | 18 | 173 | 18 | 170 | NAC domain-containing protein 19 |
3swp_B | 1e-50 | 18 | 173 | 18 | 170 | NAC domain-containing protein 19 |
3swp_C | 1e-50 | 18 | 173 | 18 | 170 | NAC domain-containing protein 19 |
3swp_D | 1e-50 | 18 | 173 | 18 | 170 | NAC domain-containing protein 19 |
4dul_A | 9e-51 | 18 | 173 | 15 | 167 | NAC domain-containing protein 19 |
4dul_B | 9e-51 | 18 | 173 | 15 | 167 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that acts as positive regulator of leaf senescence. Activates NYC1, SGR1, SGR2 and PAO, which are genes involved in chlorophyll catabolic processes. Activates senescence-associated genes, such as RNS1, SAG12 and SAG13. {ECO:0000269|PubMed:27021284}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00332 | DAP | Transfer from AT3G04060 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bostr.2570s0302.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY084852 | 0.0 | AY084852.1 Arabidopsis thaliana clone 119460 mRNA, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010518044.1 | 0.0 | PREDICTED: NAC domain-containing protein 92-like | ||||
Swissprot | Q9SQQ6 | 0.0 | NAC46_ARATH; NAC domain-containing protein 46 | ||||
TrEMBL | D7L212 | 0.0 | D7L212_ARALL; ANAC046 | ||||
STRING | Bostr.2570s0302.1.p | 0.0 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2269 | 27 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G04060.1 | 0.0 | NAC domain containing protein 46 |
Link Out ? help Back to Top | |
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Phytozome | Bostr.2570s0302.1.p |
Publications ? help Back to Top | |||
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