PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.2570s0298.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family M-type_MADS
Protein Properties Length: 202aa    MW: 22753.2 Da    PI: 9.582
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.2570s0298.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF56.53.6e-182069150
                         S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
               SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                         k++en+  r +tfskR++gi+KK +E+  +Cd+eva ++fs+ gk y++s
  Bostr.2570s0298.1.p 20 KKVENYGDRMITFSKRKAGIFKKMNEIIAMCDVEVAFLVFSQAGKPYTFS 69
                         6789*********************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004327.1E-221271IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.49E-231287IPR002100Transcription factor, MADS-box
PROSITE profilePS5006623.7591272IPR002100Transcription factor, MADS-box
PRINTSPR004042.5E-171434IPR002100Transcription factor, MADS-box
PfamPF003191.7E-192168IPR002100Transcription factor, MADS-box
PRINTSPR004042.5E-173449IPR002100Transcription factor, MADS-box
PRINTSPR004042.5E-174970IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
MSMKQTKGRQ TKGKQKIEIK KVENYGDRMI TFSKRKAGIF KKMNEIIAMC DVEVAFLVFS  60
QAGKPYTFSH PSMEEVAARL KNPSGQEPFA KDDTGPLVEA YKKRKIQDLI QKLEALEEEL  120
AIDLEKLKLI KESRKEKKLD KMWWNIPPEG GLSVKEVQQR HQAVVELHDN LCEMVLSRLG  180
KDGNGSSSGS SGRDHFVGDE A*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.2570s0298.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002882329.21e-108MADS-box transcription factor 23
TrEMBLD7L2161e-107D7L216_ARALL; MADS-box family protein
STRINGBostr.2570s0298.1.p1e-147(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM8628390
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04100.12e-74AGAMOUS-like 57