PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.2570s0262.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family G2-like
Protein Properties Length: 320aa    MW: 35336.8 Da    PI: 6.865
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.2570s0262.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like83.81.8e-26157203955
              G2-like   9 eLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                          +LHe+Fvea++qLGGse+AtPk++l+l++ +gLt++hvkSHLQkYR+
  Bostr.2570s0262.1.p 157 KLHEAFVEAINQLGGSERATPKAVLKLINSPGLTIYHVKSHLQKYRT 203
                          7*********************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.7E-22157205IPR009057Homeodomain-like
SuperFamilySSF466898.06E-11157204IPR009057Homeodomain-like
TIGRFAMsTIGR015571.0E-17157203IPR006447Myb domain, plants
PfamPF143794.4E-10228269IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MTLASDFGFP IAVSSSFPIT LEERYHHYFP NSLWVPSGQE LMNNNPVPCQ VFLLVSGGSS  60
GGNLFSSSSG FCNGVYVSSS SQARPSVSIS GEGQMQECSV ETQSLQLINQ PPQEQKNMSW  120
SSDQLQGFFE LCNIVFNNQC QVDPSMDPFN AKNSPAKLHE AFVEAINQLG GSERATPKAV  180
LKLINSPGLT IYHVKSHLQK YRTARHNKPE LSEIQNLKTI EDIKSLDLKT RIEITEALRL  240
QMKIQRSLHL KIEEQGRYLQ MMIEKQQKMQ ENKKGSPCSS SISEADPSAP SPDLSQSGSS  300
TMEQSVSASG TTRKRVRED*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A2e-211572061059Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B2e-211572061059Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A2e-211572061059Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C2e-211572061059Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D2e-211572061059Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F2e-211572061059Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H2e-211572061059Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J2e-211572061059Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.2570s0262.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankATAC0222878e-90AC022287.9 Arabidopsis thaliana chromosome III BAC T27C4 genomic sequence, complete sequence.
GenBankCP0026868e-90CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013640650.11e-100myb family transcription factor PHL13-like isoform X1
SwissprotF4J3P71e-90PHLD_ARATH; Myb family transcription factor PHL13
TrEMBLA0A397ZN754e-99A0A397ZN75_BRACM; Uncharacterized protein
STRINGBostr.2570s0262.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM85627117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04450.21e-79G2-like family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]