PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bostr.2570s0210.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
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Family | CPP | ||||||||
Protein Properties | Length: 641aa MW: 70384.7 Da PI: 5.0158 | ||||||||
Description | CPP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCR | 46.3 | 8.6e-15 | 457 | 495 | 2 | 40 |
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 ++k+C+C+kskClk+YC+Cfaag +C e C+C++C+Nk Bostr.2570s0210.1.p 457 SCKRCKCRKSKCLKLYCDCFAAGLYCFEPCSCQNCFNKP 495 589**********************************96 PP | |||||||
2 | TCR | 52.9 | 7.5e-17 | 543 | 580 | 2 | 39 |
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 +++gCnC+ks ClkkYCeCf g+ Cs++C+C +CkN Bostr.2570s0210.1.p 543 HTRGCNCRKSGCLKKYCECFMMGVGCSSSCRCMGCKNI 580 889**********************************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01114 | 1.1E-15 | 456 | 497 | IPR033467 | Tesmin/TSO1-like CXC domain |
PROSITE profile | PS51634 | 36.2 | 457 | 582 | IPR005172 | CRC domain |
Pfam | PF03638 | 4.0E-10 | 459 | 494 | IPR005172 | CRC domain |
SMART | SM01114 | 2.0E-18 | 542 | 583 | IPR033467 | Tesmin/TSO1-like CXC domain |
Pfam | PF03638 | 2.9E-12 | 545 | 579 | IPR005172 | CRC domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 641 aa Download sequence Send to blast |
MDTPDKNRIS AVSFCNFEDS PVFQYINDLS PIEPVKPARP DNILHSLAFT SPSSLFSSPQ 60 LNSYRDSRFS IKRHRSLDLS SPVVVIGETV KNSPDALEAV KITGLSEEQL KCRPEQLANV 120 SETKPFKEQI SLAIELANSL KHGRDGFDIQ MVSCDEAPMD PENEIGRGGG SRDLSDELCR 180 QPNDPLDFDA DSDGVLQTEE MEAESGFDAE RIMFDVAGIQ NSGQQIPKIT DSRLNSFASE 240 PQQLSICFNN SANVVEPGGS CSVQVADGAP DITLSSSSKV AAIDSTAEAE GKEDTGLQPS 300 RKQRSVRRRC LTFDVGGSQK RIPLRDSTND LPLDSTSINK APSPQVCLDT SKQDTDEILP 360 IPRTIGLHLN DFVNPSVSSD QNKIKIKDGR CLPPGPTTFH HNIEDEFSTP VSTKRDLVYS 420 DIKIMEAPER SMEGECFDQH MATEHRQLSQ GPDEFGSCKR CKCRKSKCLK LYCDCFAAGL 480 YCFEPCSCQN CFNKPIHEDL VMKTRQVIEA RNPLAFAPKV VSTSDSSIDL WDENSKTPAS 540 ARHTRGCNCR KSGCLKKYCE CFMMGVGCSS SCRCMGCKNI FGHRNEKCAG ESDAVTINDE 600 AKDNGDHGDA SSQNEDTSKS ERRNRMLLPS SVAFRSLASL * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5fd3_A | 8e-19 | 459 | 580 | 12 | 121 | Protein lin-54 homolog |
5fd3_B | 8e-19 | 459 | 580 | 12 | 121 | Protein lin-54 homolog |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Plays a role in development of both male and female reproductive tissues. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bostr.2570s0210.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT003926 | 0.0 | BT003926.1 Arabidopsis thaliana clone RAFL15-25-I04 (R20696) unknown protein (At3g04850) mRNA, complete cds. | |||
GenBank | BT005010 | 0.0 | BT005010.1 Arabidopsis thaliana clone U20696 unknown protein (At3g04850) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023642810.1 | 0.0 | protein tesmin/TSO1-like CXC 4 isoform X1 | ||||
Swissprot | Q84JZ8 | 0.0 | TCX4_ARATH; Protein tesmin/TSO1-like CXC 4 | ||||
TrEMBL | A0A178VLW7 | 0.0 | A0A178VLW7_ARATH; Uncharacterized protein | ||||
STRING | Bostr.2570s0210.1.p | 0.0 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM14840 | 16 | 20 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G04850.1 | 0.0 | Tesmin/TSO1-like CXC domain-containing protein |
Link Out ? help Back to Top | |
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Phytozome | Bostr.2570s0210.1.p |