PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bostr.2570s0082.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 270aa MW: 30966.9 Da PI: 9.131 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 55.4 | 7.7e-18 | 11 | 50 | 3 | 42 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42 i+n+s r+ tf kR++g++KK +ELS+LC+++++ ii+s+ Bostr.2570s0082.1.p 11 ISNDSSRKATFKKRKKGLMKKVNELSTLCGINACAIIYSP 50 9**************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 17.367 | 1 | 49 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.0E-25 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 1.29E-23 | 2 | 85 | No hit | No description |
SuperFamily | SSF55455 | 1.7E-25 | 2 | 95 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.8E-9 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.6E-18 | 11 | 51 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.8E-9 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 270 aa Download sequence Send to blast |
MTRKKVKLAY ISNDSSRKAT FKKRKKGLMK KVNELSTLCG INACAIIYSP YDSNPEVWPS 60 NSDIQRIVSE FRTLPETDQH KKMVDQETYL RQRIAKASEH LKRQRKDNRE LEMTEVMFQC 120 LVGNMGMFHM NIMDLNDLGY LAEQYLKDIN RRFEILQNSG MEIGESSMAV MASTTAPTST 180 TNEAGSSSSF AAFVNPLQQQ QQLHHHQQFR HPSSPHIMHQ HNNNHHDHHQ PQHQYQRILG 240 DFSTVSAVDS SSCTISVTNP NLTNNTWFR* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 2 | 24 | RKKVKLAYISNDSSRKATFKKRK |
2 | 21 | 25 | KKRKK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. Controls central cell differentiation during female gametophyte development. Required for the expression of DEMETER and DD46, but not for the expression of FIS2 (PubMed:16798889). Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction (Probable). {ECO:0000269|PubMed:16798889, ECO:0000305|PubMed:26462908}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bostr.2570s0082.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010466902.1 | 1e-130 | PREDICTED: agamous-like MADS-box protein AGL80 | ||||
Swissprot | Q9FJK3 | 1e-112 | AGL80_ARATH; Agamous-like MADS-box protein AGL80 | ||||
TrEMBL | R0G6N6 | 1e-110 | R0G6N6_9BRAS; Uncharacterized protein | ||||
STRING | Bostr.2570s0082.1.p | 0.0 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM70 | 28 | 415 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48670.1 | 1e-112 | AGAMOUS-like 80 |
Link Out ? help Back to Top | |
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Phytozome | Bostr.2570s0082.1.p |
Publications ? help Back to Top | |||
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