PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.2570s0035.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family FAR1
Protein Properties Length: 783aa    MW: 89755 Da    PI: 7.4637
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.2570s0035.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR167.53.5e-2162136189
                 FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 
                          +fYn+YA+++GF+vr+ + ++s+++g++ +r+fvCskeg++ +              +rtgC a ++v+++++gkw+++++++eHnHel
  Bostr.2570s0035.1.p  62 DFYNSYATRTGFKVRTGQLYRSRTDGTVSSRRFVCSKEGFQLN--------------SRTGCPAFIRVQRRDTGKWVLDQIQKEHNHEL 136
                          6***************************************876..............589***************************98 PP
2FAR168.41.8e-21222298191
                 FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                          +fY++YA+ vGF+vr+ +  +sk +g+it+r+fvCskeg+++++              r+gC a +++k++++g w v++l+++HnHel 
  Bostr.2570s0035.1.p 222 QFYQAYAEVVGFRVRIGQLFRSKVDGSITSRRFVCSKEGFQHPS--------------RMGCGAYMRIKRQDSGGWIVDRLNKDHNHELE 297
                          6***************************************9994..............799***************************97 PP

                 FAR1  91 p 91 
                          p
  Bostr.2570s0035.1.p 298 P 298
                          5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031019.9E-1762136IPR004330FAR1 DNA binding domain
PfamPF031017.3E-17222298IPR004330FAR1 DNA binding domain
PfamPF105512.0E-25394486IPR018289MULE transposase domain
PROSITE profilePS5096610.373668704IPR007527Zinc finger, SWIM-type
PfamPF044341.5E-8675701IPR007527Zinc finger, SWIM-type
SMARTSM005751.3E-8679706IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 783 aa     Download sequence    Send to blast
MDMESADTEP TSLNCGNNMV VKAYPLGMVR IMNNNGIGED EGDSGVEPYV GLEFDTAEEA  60
RDFYNSYATR TGFKVRTGQL YRSRTDGTVS SRRFVCSKEG FQLNSRTGCP AFIRVQRRDT  120
GKWVLDQIQK EHNHELGGHI EETTPRPSVQ QRAPAPTKLG ISVPHRPKMK VVDEADKGQS  180
CPSGVISFKR FKGAEESDGQ TQPKATEPYA GLEFGSANEA CQFYQAYAEV VGFRVRIGQL  240
FRSKVDGSIT SRRFVCSKEG FQHPSRMGCG AYMRIKRQDS GGWIVDRLNK DHNHELEPGK  300
KNAGMKKITE DVTGGLDSVD LIELNDFSNH ISKTRENTIG KEWYPVLFDY FQSKQAEDMG  360
FFYAVELDSN GSCMSIFWAD SRSRFACSQF GDAVVFDTSY RKGEYSVPFA TFIGFNHHRQ  420
PVLLGGALVA DESKEAFSWL FQTWLRAMSG RRPRSIVADQ DLPIQQAVAQ VFPGTHHRFS  480
AWQIRSKERE NLSSFPNEFR YEYEKCLYQS QTTVEFDTMW SALVNKYGLR DNMWLREIYE  540
KRENWVPAYL RASFFGGIPV NGTFEPFYGT SLNSLTSLRE FISRYEQGLE QRREEERKED  600
FNSYNLQPFL QTKEPVEEQC RRLYTLTIFR IFQSELAQSY NYLGLKTYEE GAISRFLVRK  660
CGNENEKHAV TFSASNLNAS CSCQMFEYEG LLCRHILKVF NLLDIRELPS RYILHRWTKN  720
AEFGFVRDVE SGVTSQDLKG LMIWSLREAA SKYIEFGTSS LEKYKLAYEI MREGGKKLCW  780
QR*
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.2570s0035.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankATAC0189070.0AC018907.5 Arabidopsis thaliana chromosome III BAC F28L1 genomic sequence, complete sequence.
GenBankCP0026860.0CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020889514.10.0protein FAR1-RELATED SEQUENCE 7 isoform X1
RefseqXP_020889515.10.0protein FAR1-RELATED SEQUENCE 7 isoform X1
RefseqXP_020889516.10.0protein FAR1-RELATED SEQUENCE 7 isoform X1
SwissprotQ9M8J30.0FRS7_ARATH; Protein FAR1-RELATED SEQUENCE 7
TrEMBLR0HJN80.0R0HJN8_9BRAS; Uncharacterized protein
STRINGBostr.2570s0035.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM57302239
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06250.10.0FAR1-related sequence 7
Publications ? help Back to Top
  1. Ritter A, et al.
    The transcriptional repressor complex FRS7-FRS12 regulates flowering time and growth in Arabidopsis.
    Nat Commun, 2017. 8: p. 15235
    [PMID:28492275]
  2. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]