PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Previous version: v3.0 v4.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bostr.25542s0020.1.p

Organism

Boechera stricta

Taxonomic ID

72658

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera

Family

Nin-like

Protein Properties

Length: 706aa MW: 78774.6 Da PI: 7.9766

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bostr.25542s0020.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	91	9.3e-29	434	484	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 e++i+le+l+++F++++kdAAk++gvc+T+LKriCRq+GI+RWP+Rkik++ Bostr.25542s0020.1.p 434 ENDITLETLRQHFAGSLKDAAKNIGVCPTTLKRICRQHGISRWPSRKIKKV 484 789**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.223	420	504	IPR003035	RWP-RK domain
Pfam	PF02042	6.9E-26	437	484	IPR003035	RWP-RK domain
Gene3D	G3DSA:3.10.20.240	7.8E-20	612	699	No hit	No description
SuperFamily	SSF54277	7.2E-20	613	701	No hit	No description
PROSITE profile	PS51745	22.354	615	700	IPR000270	PB1 domain
SMART	SM00666	1.3E-20	615	700	IPR000270	PB1 domain
CDD	cd06407	3.42E-38	616	699	No hit	No description
Pfam	PF00564	1.8E-16	616	699	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006107	Biological Process	oxaloacetate metabolic process
GO:0006108	Biological Process	malate metabolic process
GO:0005515	Molecular Function	protein binding
GO:0050152	Molecular Function	omega-amidase activity

Sequence ? help Back to Top
Protein Sequence Length: 706 aa Download sequence Send to blast
MEESNNSGVV DFPENFMDEL LWEECWEEEE TRQKNEVTLS SSSPSPSPSG LKERVTCAMG 60 HLQEVMGERE LLIQLWVPVE RRSGRVLSTE EQPYSLKSFS QSQSLALYRD ASAGYSFAAE 120 VGSDQLVGLP GRVFLRRMPE WTPDVRFFRS EEYPRIGYAR RYQVRASLAL PLFQGASRNC 180 VAVMEMVTTH RNLEYASKLH TICHALQAFD LRTSQTSIVP ASSLKPHTEV ASILQGICSS 240 HGLPLAITWG HQDSLCLSAL ISACYAADQD SRCFLAACSE HHLLGGEGIA GRAFATKKQC 300 FATDVAIFSK CSYPLSHYAR MFDLHAALAV PLLTRRNRTI QFVLEFFFPR DCLDIQTQRL 360 ALSSQLNLRF QSSPHLMVDD QLAEEVRDTA TVPLTDHSRG SAEEEAKDPK GKQVSLSFSP 420 SSSLESRKRK TKAENDITLE TLRQHFAGSL KDAAKNIGVC PTTLKRICRQ HGISRWPSRK 480 IKKVGHSLRK LKVVMDSVEG VQGSLHLASF YSSFPQLQSS SSSSSSSSFT LINPTQTVHV 540 PPKSPPSSPG IQSSSGSSTC CSSEEQQLGG FQKPALSHPQ LLTLSSLQED QRPVRVTSSL 600 PPLPSTTAPR KAKDGMKVKA MFRDSMLRMC LQPHWRLTDL RREIAKRFGM DDVLRSNFSL 660 KYMDDDQEWV LLTCEADLEE CIQVYKSSLE KNIRIMVHHP LSSFI*

Sequence ? help Back to Top

Protein Sequence Length: 706 aa Download sequence Send to blast

MEESNNSGVV DFPENFMDEL LWEECWEEEE TRQKNEVTLS SSSPSPSPSG LKERVTCAMG  60
HLQEVMGERE LLIQLWVPVE RRSGRVLSTE EQPYSLKSFS QSQSLALYRD ASAGYSFAAE  120
VGSDQLVGLP GRVFLRRMPE WTPDVRFFRS EEYPRIGYAR RYQVRASLAL PLFQGASRNC  180
VAVMEMVTTH RNLEYASKLH TICHALQAFD LRTSQTSIVP ASSLKPHTEV ASILQGICSS  240
HGLPLAITWG HQDSLCLSAL ISACYAADQD SRCFLAACSE HHLLGGEGIA GRAFATKKQC  300
FATDVAIFSK CSYPLSHYAR MFDLHAALAV PLLTRRNRTI QFVLEFFFPR DCLDIQTQRL  360
ALSSQLNLRF QSSPHLMVDD QLAEEVRDTA TVPLTDHSRG SAEEEAKDPK GKQVSLSFSP  420
SSSLESRKRK TKAENDITLE TLRQHFAGSL KDAAKNIGVC PTTLKRICRQ HGISRWPSRK  480
IKKVGHSLRK LKVVMDSVEG VQGSLHLASF YSSFPQLQSS SSSSSSSSFT LINPTQTVHV  540
PPKSPPSSPG IQSSSGSSTC CSSEEQQLGG FQKPALSHPQ LLTLSSLQED QRPVRVTSSL  600
PPLPSTTAPR KAKDGMKVKA MFRDSMLRMC LQPHWRLTDL RREIAKRFGM DDVLRSNFSL  660
KYMDDDQEWV LLTCEADLEE CIQVYKSSLE KNIRIMVHHP LSSFI*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	425	430	SRKRKT

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bostr.25542s0020.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by nitrate. {ECO:0000269\|PubMed:15375205}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC069558	0.0	AC069558.5 Genomic Sequence For Arabidopsis thaliana Clone T5G13 From Chromosome IV, complete sequence.
GenBank	AL035538	0.0	AL035538.1 Arabidopsis thaliana DNA chromosome 4, BAC clone F20D10 (ESSA project).
GenBank	AL035539	0.0	AL035539.1 Arabidopsis thaliana DNA chromosome 4, BAC clone F22I13 (ESSA project).
GenBank	AL161593	0.0	AL161593.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 89.
GenBank	CP002687	0.0	CP002687.1 Arabidopsis thaliana chromosome 4 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010431765.1	0.0	PREDICTED: protein NLP3-like
Swissprot	Q9SVF1	0.0	NLP3_ARATH; Protein NLP3
TrEMBL	R0F7T3	0.0	R0F7T3_9BRAS; Uncharacterized protein
STRING	Bostr.25542s0020.1.p	0.0	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM15287	17	18

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38340.1	0.0	Nin-like family protein

Link Out ? help Back to Top
Phytozome	Bostr.25542s0020.1.p

Publications ? help Back to Top
Doidy J, et al. "Hit-and-Run" transcription: de novo transcription initiated by a transient bZIP1 "hit" persists after the "run". BMC Genomics, 2016. 17: p. 92 [PMID:26843062]