PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bostr.25219s0146.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
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Family | GATA | ||||||||
Protein Properties | Length: 301aa MW: 33506.8 Da PI: 8.8626 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 64.1 | 1.6e-20 | 219 | 253 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C++C ttkTp+WR+gp+g+ktLCnaCG+++r+ +l Bostr.25219s0146.2.p 219 CTHCETTKTPQWREGPNGPKTLCNACGVRFRSGRL 253 *******************************9885 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57716 | 3.33E-15 | 212 | 275 | No hit | No description |
SMART | SM00401 | 7.2E-20 | 213 | 263 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 2.3E-15 | 217 | 250 | IPR013088 | Zinc finger, NHR/GATA-type |
PROSITE profile | PS50114 | 12.084 | 217 | 249 | IPR000679 | Zinc finger, GATA-type |
CDD | cd00202 | 6.81E-17 | 218 | 267 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 219 | 244 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 2.5E-18 | 219 | 253 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 301 aa Download sequence Send to blast |
MNWLPEEDFK GLLSDDFFDD LITHLDCPLE DIDTTNGEGD WVAKFQDLEP PPMDMFPTLP 60 SQLTSCANGK APRLGIQNTV PALKQSRSSE ALSGINSTLH QSSSPPDIKV SKLFQSLSPV 120 SVLVNSCDSL SPQNSRSQRL AFPVKGIRSK RKRPTTLRFS YLFPFEPRKA EKLTPGESGS 180 ESYYSSEQHA KKKRKIQLTT HTVSSSFEPS YSDGIVRKCT HCETTKTPQW REGPNGPKTL 240 CNACGVRFRS GRLVPEYRPA SSPTFIPSVH SNSHRKIIEM RRKDDNQFDT SMMHAVISGA 300 * |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00130 | DAP | Transfer from AT1G08010 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bostr.25219s0146.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006304051.1 | 0.0 | GATA transcription factor 11 | ||||
Swissprot | Q6DBP8 | 1e-176 | GAT11_ARATH; GATA transcription factor 11 | ||||
TrEMBL | R0IF88 | 0.0 | R0IF88_9BRAS; Uncharacterized protein | ||||
STRING | Bostr.25219s0146.1.p | 0.0 | (Boechera stricta) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G08010.2 | 1e-172 | GATA transcription factor 11 |
Link Out ? help Back to Top | |
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Phytozome | Bostr.25219s0146.2.p |