PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bostr.24513s0205.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
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Family | LBD | ||||||||
Protein Properties | Length: 272aa MW: 29414.2 Da PI: 8.7824 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 125.2 | 3.1e-39 | 52 | 150 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 +CaaCk+lrr+Ca++C+++pyf ++p+kfa+vhk+FGasnv+k+l ++ e++r da++slvyeA+ r+rdP+yG++g i++lq+++++ Bostr.24513s0205.1.p 52 PCAACKLLRRRCAEECPFSPYFSPHEPHKFAAVHKVFGASNVSKMLLEVGESQRGDAANSLVYEANLRLRDPIYGCMGAISALQHHIQS 140 7**************************************************************************************** PP DUF260 90 lkaelallke 99 l++el ++++ Bostr.24513s0205.1.p 141 LQSELTTVRT 150 *****99886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 25.067 | 51 | 152 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 3.8E-40 | 52 | 149 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0016020 | Cellular Component | membrane |
Sequence ? help Back to Top |
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Protein Sequence Length: 272 aa Download sequence Send to blast |
MSRDREGFGE YYKIVKKIKK DPTFETTTDH AVMGIRRHVA VPPGTTLNTV TPCAACKLLR 60 RRCAEECPFS PYFSPHEPHK FAAVHKVFGA SNVSKMLLEV GESQRGDAAN SLVYEANLRL 120 RDPIYGCMGA ISALQHHIQS LQSELTTVRT DILRHKYREA TTITSLQNNN FNNTTTTSSV 180 SCDHHALASA ILLPPPPPPP PPPPPRPPRL LSSQPAPPPT PPASLPSPSM VVSSSSSSNS 240 SATNSMYNPP PSSAAGYSNS LSSDNNVHYF D* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 3e-40 | 45 | 163 | 4 | 122 | LOB family transfactor Ramosa2.1 |
5ly0_B | 3e-40 | 45 | 163 | 4 | 122 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00283 | DAP | Transfer from AT2G30340 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bostr.24513s0205.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB473843 | 0.0 | AB473843.1 Arabidopsis thaliana ASL10 mRNA for ASYMMETRIC LEAVES2-like 10 protein, complete cds. | |||
GenBank | AF447888 | 0.0 | AF447888.1 Arabidopsis thaliana LOB DOMAIN 13 (LBD13) mRNA, complete cds. | |||
GenBank | BT026052 | 0.0 | BT026052.1 Arabidopsis thaliana At2g30340 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018433132.1 | 1e-147 | PREDICTED: LOW QUALITY PROTEIN: LOB domain-containing protein 13 | ||||
Swissprot | Q9AT61 | 1e-141 | LBD13_ARATH; LOB domain-containing protein 13 | ||||
TrEMBL | A0A178VTE1 | 1e-139 | A0A178VTE1_ARATH; LBD13 | ||||
STRING | Bostr.24513s0205.1.p | 0.0 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1927 | 27 | 81 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G30340.1 | 1e-118 | LOB domain-containing protein 13 |
Link Out ? help Back to Top | |
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Phytozome | Bostr.24513s0205.1.p |
Publications ? help Back to Top | |||
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