PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.24340s0004.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family G2-like
Protein Properties Length: 260aa    MW: 29616.8 Da    PI: 7.4777
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.24340s0004.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like102.52.6e-322477255
               G2-like  2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                          prlrWtp+LH++Fv+av++LGG+ kAtPk +l++m+vkgLt++hvkSHLQ+YR 
  Bostr.24340s0004.1.p 24 PRLRWTPDLHRSFVHAVDSLGGQYKATPKLVLKIMDVKGLTISHVKSHLQMYRG 77
                          8****************************************************5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.2E-292077IPR009057Homeodomain-like
PROSITE profilePS5129410.5642080IPR017930Myb domain
TIGRFAMsTIGR015572.7E-222476IPR006447Myb domain, plants
SuperFamilySSF466891.97E-142476IPR009057Homeodomain-like
PfamPF002495.8E-72576IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MGRCGRSSDG GIGGVRPYVR SPVPRLRWTP DLHRSFVHAV DSLGGQYKAT PKLVLKIMDV  60
KGLTISHVKS HLQMYRGSRL TLLGKPEESS SPSSRRRRRQ DNEEDHLHDN LSVHARNDCL  120
LGFHSFNFRE QTSATDNDDD DFLNIMNMER TKTFAGNGES IKFQSHHFLE AESTKNNWKN  180
TWRENEHEEE EEKEELSLSL SLNHPHNHQQ RWRSYATSSL SETSEAVSSS STAPFIFRDC  240
FASSKIDLNL NLSFSVLRS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A8e-202579357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B8e-202579357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C8e-202579357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D8e-202579357Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.24340s0004.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ6304860.0AJ630486.1 Arabidopsis thaliana mRNA for hypothetical protein, clone At1g14600.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020866305.11e-152putative Myb family transcription factor At1g14600 isoform X2
SwissprotQ700D91e-141MYBF_ARATH; Putative Myb family transcription factor At1g14600
TrEMBLD7KBM41e-149D7KBM4_ARALL; DNA binding protein
STRINGBostr.24340s0004.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM46941852
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14600.11e-124G2-like family protein