PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.23794s0549.3.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family bZIP
Protein Properties Length: 362aa    MW: 38138 Da    PI: 5.7682
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.23794s0549.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_1728.6e-23255317163
                           XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                           ++elkr+rrkq+NRe+ArrsR+RK+ae++eL++++++L +eN+ L+ e+++lk ++++l++e+
  Bostr.23794s0549.3.p 255 DRELKRQRRKQSNRESARRSRLRKQAECDELAQRAEVLNEENTNLRAEINKLKSQCEELTAEN 317
                           689*********************************************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077771.0E-82758IPR012900G-box binding protein, multifunctional mosaic region
PfamPF165965.5E-4597224No hitNo description
Gene3DG3DSA:1.20.5.1701.4E-17248314No hitNo description
SMARTSM003382.6E-20255319IPR004827Basic-leucine zipper domain
PfamPF001703.3E-20256317IPR004827Basic-leucine zipper domain
PROSITE profilePS5021713.185257320IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.13E-11258314No hitNo description
CDDcd147025.20E-24260310No hitNo description
PROSITE patternPS000360262277IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MASSEMEKSS KEKEPKTPPS SSAAPPSSQH MMPPYGTPPH PYVAMYPPGG MYAHPSMPPG  60
SYPYSPYAMP SPNGMTEASG NTIGGTEGDA KQSEVKEKLP IKRSRGSLGS LNMITGKNNE  120
PGKNSGASAN GAYSKSGESA SDGSSEGSEG NSQNDSGSGQ DGKDASENGG SANGPRNGSV  180
GTPLLPVSQT VPIMPMTAAG VPGPPTNLNI GMDYWGAPTS SAIPGMHGKV STPVPGVVAP  240
VSRDGGHSQP WLQDDRELKR QRRKQSNRES ARRSRLRKQA ECDELAQRAE VLNEENTNLR  300
AEINKLKSQC EELTAENTSL KDQLLLFPPL EGINMDKDGQ EPDTNQTGAP ERKVDSYKDS  360
T*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1271277RRSRLRK
2271278RRSRLRKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds to the G-box motif (5'-CACGTG-3') and other cis-acting elements with 5'-ACGT-3' core, such as Hex, C-box and as-1 motifs. Possesses high binding affinity to G-box, much lower affinity to Hex and C-box, and little affinity to as-1 element (PubMed:18315949). G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control (Probable). Binds to the G-box motif 5'-CACGTG-3' of LHCB2.4 (At3g27690) promoter. May act as transcriptional repressor in light-regulated expression of LHCB2.4. Binds DNA as monomer. DNA-binding activity is redox-dependent (PubMed:22718771). {ECO:0000269|PubMed:18315949, ECO:0000269|PubMed:22718771, ECO:0000305|PubMed:18315949}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00291DAPTransfer from AT2G35530Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.23794s0549.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0220550.0BT022055.1 Arabidopsis thaliana At2g35530 gene, complete cds.
GenBankBT0264410.0BT026441.1 Arabidopsis thaliana At2g35530 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023640672.10.0bZIP transcription factor 16 isoform X2
SwissprotQ501B20.0BZP16_ARATH; bZIP transcription factor 16
TrEMBLE4MXB70.0E4MXB7_EUTHA; mRNA, clone: RTFL01-26-I15
STRINGBostr.23794s0549.1.p0.0(Boechera stricta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35530.10.0basic region/leucine zipper transcription factor 16
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]