PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bostr.23794s0547.2.p

Organism

Boechera stricta

Taxonomic ID

72658

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera

Family

BBR-BPC

Protein Properties

Length: 222aa MW: 24397.9 Da PI: 10.4223

Description

BBR-BPC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bostr.23794s0547.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GAGA_bind	271.7	3.7e-83	30	221	108	301
GAGA_bind 108 idslqqlsepqledsave.lreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesaderskaekksid 195 +s ls+ +++a++ + ++ l+++p+++ +++++++k+k+ +q+++k++++k +kk+ ++s+k+++++s +++k ekk++d Bostr.23794s0547.2.p 30 FHSCIDLSQISQANPAEDvMVLQSRLSHPPTRDYRNSMETVKQKSMNQSPSKALKPKPPRKKR--SASNKSKTAPSI-PETKCEKKNLD 115 23322233333334444558889999***********************999999998888..677788888887.69***** PP GAGA_bind 196 lvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvD 284 ++++ s+D+st+P+PvCsCtG++r+CYkWG+GGWqS+CCt++iS+yPLP+st+r+gaR+agrKmS+ga+ klL++La+eGy+ls+pvD Bostr.23794s0547.2.p 116 INIDISSFDTSTVPPPVCSCTGVSRVCYKWGMGGWQSSCCTISISTYPLPMSTTRPGARLAGRKMSNGAYVKLLARLAGEGYNLSHPVD 204 ************************************************************************************* PP GAGA_bind 285 LkdhWAkHGtnkfvtir 301 Lk+hWA+HGtnkfvti+ Bostr.23794s0547.2.p 205 LKNHWARHGTNKFVTIK 221 **************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01226	5.8E-98	1	221	IPR010409	GAGA-binding transcriptional activator
Pfam	PF06217	8.6E-71	56	221	IPR010409	GAGA-binding transcriptional activator

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 222 aa Download sequence Send to blast
MNSFPSQNLM LSATNANKDA DLRTSNAHWF HSCIDLSQIS QANPAEDVMV LQSRLSHPPT 60 RDYRNSMETV KQKSMNQSPS KALKPKPPRK KRSASNKSKT APSIPETKCE KKNLDINIDI 120 SSFDTSTVPP PVCSCTGVSR VCYKWGMGGW QSSCCTISIS TYPLPMSTTR PGARLAGRKM 180 SNGAYVKLLA RLAGEGYNLS HPVDLKNHWA RHGTNKFVTI K*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269\|PubMed:14731261}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bostr.23794s0547.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU089961	0.0	EU089961.1 Arabidopsis arenosa GAGA-binding transcriptional activator (BBR/BPC7) gene, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006294940.1	1e-138	protein BASIC PENTACYSTEINE7
Swissprot	O82286	1e-136	BPC7_ARATH; Protein BASIC PENTACYSTEINE7
TrEMBL	R0HUS9	1e-137	R0HUS9_9BRAS; Uncharacterized protein
STRING	Bostr.23794s0547.1.p	1e-165	(Boechera stricta)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35550.4	1e-123	basic pentacysteine 7

Link Out ? help Back to Top
Phytozome	Bostr.23794s0547.2.p