PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.23794s0534.2.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family Trihelix
Protein Properties Length: 272aa    MW: 31679.4 Da    PI: 10.2118
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.23794s0534.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix54.92.2e-1756137274
              trihelix   2 WtkqevlaLiearremeer.lrrgk........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtse 74 
                           Wt +e+l+Liea++  eer +rr++        +++ +W+++ +++++rg+ r+++qC++kw+nl ++ykki+e e++r + 
  Bostr.23794s0534.2.p  56 WTVSETLVLIEAKKMEEERrVRRSEkkpenrnkSAELRWKWIEEYCWRRGCLRNQNQCNDKWDNLMRDYKKIREYERSRVES 137
                           ************99555440444424445555599******************************************98432 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.96948121IPR017877Myb-like domain
PfamPF138371.4E-1355153No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MILTGLGSSS LSSPLCPTLI SVSLYFLSSR FKDTNIWLIH RVVNRLVMRE YRKGNWTVSE  60
TLVLIEAKKM EEERRVRRSE KKPENRNKSA ELRWKWIEEY CWRRGCLRNQ NQCNDKWDNL  120
MRDYKKIREY ERSRVESSFN TGSSSPASYW KMEKTKRKER NLPSNMLSRI YDALAELVDN  180
KTLPYSSSAG NGGQILRVCQ QSLGFVAQMM AQPMHQIPTT IVLSLPSPPP PQPLVLSHPP  240
PFTFHAEPIQ PTTHRRRSER EQCREKPLPE E*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.23794s0534.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0060681e-127AC006068.4 Arabidopsis thaliana chromosome 2 clone T20F21 map ve016, complete sequence.
GenBankCP0026851e-127CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010516756.11e-110PREDICTED: uncharacterized protein LOC104792327
RefseqXP_010516759.11e-110PREDICTED: uncharacterized protein LOC104792327
TrEMBLA0A178VNY41e-104A0A178VNY4_ARATH; Uncharacterized protein
STRINGBostr.23794s0534.1.p1e-157(Boechera stricta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35640.11e-93Trihelix family protein