PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bostr.23794s0534.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
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Family | Trihelix | ||||||||
Protein Properties | Length: 367aa MW: 41669.5 Da PI: 10.0647 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 54.1 | 4e-17 | 56 | 137 | 2 | 74 |
trihelix 2 WtkqevlaLiearremeer.lrrgk........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtse 74 Wt +e+l+Liea++ eer +rr++ +++ +W+++ +++++rg+ r+++qC++kw+nl ++ykki+e e++r + Bostr.23794s0534.1.p 56 WTVSETLVLIEAKKMEEERrVRRSEkkpenrnkSAELRWKWIEEYCWRRGCLRNQNQCNDKWDNLMRDYKKIREYERSRVES 137 ************99555440444424445555599******************************************98432 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 6.969 | 48 | 121 | IPR017877 | Myb-like domain |
Pfam | PF13837 | 1.6E-12 | 55 | 153 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 367 aa Download sequence Send to blast |
MILTGLGSSS LSSPLCPTLI SVSLYFLSSR FKDTNIWLIH RVVNRLVMRE YRKGNWTVSE 60 TLVLIEAKKM EEERRVRRSE KKPENRNKSA ELRWKWIEEY CWRRGCLRNQ NQCNDKWDNL 120 MRDYKKIREY ERSRVESSFN TGSSSPASYW KMEKTKRKER NLPSNMLSRI YDALAELVDN 180 KTLPYSSSAG NGGQILRVCQ QSLGFVAQMM AQPMHQIPTT IVLSLPSPPP PQPLVLSHPP 240 PFTFHAEPIQ PTVDTSQAKR TRTMPGETTA GGVREAEENA VGAALSRCAS VIAQAKRESE 300 ERQEMRHKEV MRLQERRLKI EESKADINRQ GMSGFVDAIN QLATSILALA SSSSCHNNHN 360 HQGGPP* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bostr.23794s0534.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC006068 | 1e-127 | AC006068.4 Arabidopsis thaliana chromosome 2 clone T20F21 map ve016, complete sequence. | |||
GenBank | CP002685 | 1e-127 | CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002879564.1 | 1e-164 | uncharacterized protein LOC9315631 isoform X2 | ||||
TrEMBL | A0A178VNY4 | 1e-163 | A0A178VNY4_ARATH; Uncharacterized protein | ||||
STRING | Bostr.23794s0534.1.p | 0.0 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3493 | 26 | 62 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G35640.1 | 1e-144 | Trihelix family protein |
Link Out ? help Back to Top | |
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Phytozome | Bostr.23794s0534.1.p |