PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.23794s0238.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family ERF
Protein Properties Length: 257aa    MW: 28796.8 Da    PI: 5.0316
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.23794s0238.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.82.8e-1872130155
                   AP2   1 sgykGVrwdkkrgrWvAeIrdpse.ng....krkrfslgkfgtaeeAakaaiaarkkleg 55 
                           ++++GVr++  +g+WvAeIr+p++ +g    ++kr +lg+f ta eAa a+++a+  ++g
  Bostr.23794s0238.1.p  72 CRFRGVRQRV-WGKWVAEIREPVSyRGanssRSKRLWLGTFATAAEAALAYDRAASVMYG 130
                           689*****99.**********666677777555*********************987776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.5E-1372130IPR001471AP2/ERF domain
CDDcd000185.69E-1972139No hitNo description
SMARTSM003802.7E-3073144IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-1873139IPR016177DNA-binding domain
PROSITE profilePS5103221.65473138IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.1E-2773139IPR001471AP2/ERF domain
PRINTSPR003673.5E-97485IPR001471AP2/ERF domain
PRINTSPR003673.5E-9104120IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0034605Biological Processcellular response to heat
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MEKEDNRSKQ SSSASVVSSR KRRRAVEPVE ATLQRWGKEE DREGLEGVRR VQAKGSKKGC  60
MRGKGGPENP VCRFRGVRQR VWGKWVAEIR EPVSYRGANS SRSKRLWLGT FATAAEAALA  120
YDRAASVMYG RYARLNFPEG LLENMPGGEM KKNDETESSG SYWFEVDNVS EARNGMIETK  180
DGKDYLLYDN GIELGLDKIE NLDPTDTNIV ESMVYNNPAV KAEEDYSFDR FELDSGLLYN  240
EPEGSSYYQG GGSDSY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-1574138663ATERF1
3gcc_A4e-1574138663ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11923RKRRR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates abscisic acid-inducible transcription. Involved in the regulation of plant development and tolerance to abiotic stresses (PubMed:21069430). {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:21069430}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00298DAPTransfer from AT2G38340Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.23794s0238.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) treatment (PubMed:11798174). Induced by salt, heat and drought stresses. {ECO:0000269|PubMed:11798174}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0046831e-131AC004683.3 Arabidopsis thaliana chromosome 2 clone T19C21 map ve018, complete sequence.
GenBankAY0724211e-131AY072421.1 Arabidopsis thaliana DREB-like AP2 domain transcription factor (At2g38340) mRNA, complete cds.
GenBankBT0062761e-131BT006276.1 Arabidopsis thaliana At2g38340 mRNA, complete cds.
GenBankCP0026851e-131CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006295384.11e-152dehydration-responsive element-binding protein 2E
SwissprotO809171e-105DRE2E_ARATH; Dehydration-responsive element-binding protein 2E
TrEMBLR0FYX81e-150R0FYX8_9BRAS; Uncharacterized protein
STRINGBostr.23794s0238.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM142491823
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38340.18e-91ERF family protein
Publications ? help Back to Top
  1. Huang KC,Lin WC,Cheng WH
    Salt hypersensitive mutant 9, a nucleolar APUM23 protein, is essential for salt sensitivity in association with the ABA signaling pathway in Arabidopsis.
    BMC Plant Biol., 2018. 18(1): p. 40
    [PMID:29490615]