PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bostr.23794s0047.1.p

Organism

Boechera stricta

Taxonomic ID

72658

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera

Family

Protein Properties

Length: 213aa MW: 24940.8 Da PI: 9.1512

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bostr.23794s0047.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	43.5	5.7e-14	99	188	2	82
EEE-..-HHHHT.T-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--.TT-EEE CS B3 2 fkvltpsdvlks.grlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLk.egDfvv 81 +k+l++sdv k +rl+l+k+ ++e ++++ ++ +++++ ++g++ ++k++ +++ ++ vlt+GWkeFv+ +L Df++ Bostr.23794s0047.1.p 99 KKQLMSSDVKKDqSRLMLSKQQVKETmlpfleeSENPSRGLDVSVYGPNGKVQDMKFKLWNGNNTPVLTSGWKEFVEKYDLVmISDFIT 187 699*****9989******99*9977888999*****888888888********************98899987 PP E CS B3 82 F 82 Bostr.23794s0047.1.p 188 V 188 5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd10017	3.07E-15	98	203	No hit	No description
SMART	SM01019	7.3E-8	98	203	IPR003340	B3 DNA binding domain
SuperFamily	SSF101936	2.55E-16	99	204	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	4.2E-17	99	192	IPR015300	DNA-binding pseudobarrel domain
Pfam	PF02362	1.9E-8	100	188	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 213 aa Download sequence Send to blast
MATSTGETTC LTQEEEEVHV AACILMDISQ AHQKQSRKRK DADKNQRKKV KKQNMMKISM 60 EYFSEETRRL IEVWYKTEPD PQEIFSDDEV TRQFSKPLKK QLMSSDVKKD QSRLMLSKQQ 120 VKETMLPFLE ESENPSRGLD VSVYGPNGKV QDMKFKLWNG NNTPVLTSGW KEFVEKYDLV 180 MISDFITVWM FRHIRTGKIC FVIDCHRFPL KK*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bostr.23794s0047.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002865781.1	1e-100	putative B3 domain-containing protein At4g03170
Swissprot	Q9ZR14	2e-92	Y4317_ARATH; Putative B3 domain-containing protein At4g03170
TrEMBL	D7MQ42	6e-99	D7MQ42_ARALL; Uncharacterized protein
STRING	Bostr.23794s0047.1.p	1e-158	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2103	18	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G03170.1	9e-95	B3 family protein

Link Out ? help Back to Top
Phytozome	Bostr.23794s0047.1.p

Publications ? help Back to Top
Mantegazza O, et al. Analysis of the arabidopsis REM gene family predicts functions during flower development. Ann. Bot., 2014. 114(7): p. 1507-15 [PMID:25002525]