PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bostr.22545s0001.1.p

Organism

Boechera stricta

Taxonomic ID

72658

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera

Family

YABBY

Protein Properties

Length: 165aa MW: 18381.1 Da PI: 9.6388

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bostr.22545s0001.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	194.3	5.6e-60	5	153	4	170
YABBY 4 fssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesa 92 ++eq+Cy+ CnfCn +lavsvP +slf +vtvrCGhCt++ svn+a a q l+ + ++++ v ++ s+ Bostr.22545s0001.1.p 5 AMATEQLCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCTNMWSVNMAAALQSLSRPNF-----------------QATNYAVPEYGSS 76 5689***************************************99988877766553.................2233333333333 PP YABBY 93 stsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 s+ +++ s+ +++ ++++ v+rPPekrqrvPsayn+fikeeiqrikasnPdishreafs+aaknWahfP+ihfgl Bostr.22545s0001.1.p 77 SRGHTKIP-SRITTRAITEQRIVNRPPEKRQRVPSAYNQFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGL 153 33333322.45566677777779***************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	1.3E-68	7	153	IPR006780	YABBY protein
SuperFamily	SSF47095	3.53E-8	97	146	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	1.3E-4	100	147	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009944	Biological Process	polarity specification of adaxial/abaxial axis
GO:1902183	Biological Process	regulation of shoot apical meristem development
GO:2000024	Biological Process	regulation of leaf development

Sequence ? help Back to Top
Protein Sequence Length: 165 aa Download sequence Send to blast
MANSAMATEQ LCYIPCNFCN IVLAVSVPCS SLFDIVTVRC GHCTNMWSVN MAAALQSLSR 60 PNFQATNYAV PEYGSSSRGH TKIPSRITTR AITEQRIVNR PPEKRQRVPS AYNQFIKEEI 120 QRIKASNPDI SHREAFSTAA KNWAHFPHIH FGLMLESNKQ AKLA*

Functional Description ? help Back to Top
Source	Description
UniProt	Promotes adaxial cell identity. Regulates the initiation of embryonic shoot apical meristem (SAM) development. {ECO:0000269\|PubMed:19837869}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bostr.22545s0001.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK119091	0.0	AK119091.1 Arabidopsis thaliana At2g26580 mRNA for unknown protein, complete cds, clone: RAFL21-44-F19.
GenBank	BT003734	0.0	BT003734.1 Arabidopsis thaliana At2g26580 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006295133.1	1e-116	axial regulator YABBY 5
Swissprot	Q8GW46	1e-117	YAB5_ARATH; Axial regulator YABBY 5
TrEMBL	R0FYE4	1e-115	R0FYE4_9BRAS; Uncharacterized protein
STRING	Bostr.22545s0001.1.p	1e-120	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5538	26	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G26580.2	1e-119	YABBY family protein

Link Out ? help Back to Top
Phytozome	Bostr.22545s0001.1.p

Publications ? help Back to Top
Husbands AY,Benkovics AH,Nogueira FT,Lodha M,Timmermans MC The ASYMMETRIC LEAVES Complex Employs Multiple Modes of Regulation to Affect Adaxial-Abaxial Patterning and Leaf Complexity. Plant Cell, 2015. 27(12): p. 3321-35 [PMID:26589551]