PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.22252s0130.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family MYB
Protein Properties Length: 509aa    MW: 56783.1 Da    PI: 7.0258
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.22252s0130.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.41.8e-1482128148
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                           +g WT eEde l +av  + g++Wk+Ia+ +   Rt+ qc +rwqk+l
  Bostr.22252s0130.1.p  82 KGGWTLEEDETLRRAVGTFKGKSWKKIAEFFH-DRTEVQCLHRWQKVL 128
                           688*****************************.************986 PP
2Myb_DNA-binding62.68e-20134180148
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                           +g+WT+eEde++v++v+++G+  W+ Ia+ ++ gR +kqc++rw+++l
  Bostr.22252s0130.1.p 134 KGPWTQEEDEKIVELVEKYGPAKWSVIAESLP-GRIGKQCRERWHNHL 180
                           79******************************.*************97 PP
3Myb_DNA-binding543.9e-17186229146
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                           +++WT eE+  l +a++ +G++ W+ Ia+ ++ gRt++ +k++w++
  Bostr.22252s0130.1.p 186 KDAWTSEEEVALMNAHRIHGNK-WAEIAKVLP-GRTDNAIKNHWNS 229
                           679*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.61977128IPR017930Myb domain
SMARTSM007172.2E-1281130IPR001005SANT/Myb domain
PfamPF002493.9E-1382128IPR001005SANT/Myb domain
SuperFamilySSF466895.53E-1583138IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.0E-1984138IPR009057Homeodomain-like
CDDcd001675.15E-1185128No hitNo description
PROSITE profilePS5129432.344129184IPR017930Myb domain
SuperFamilySSF466892.43E-32131227IPR009057Homeodomain-like
SMARTSM007173.0E-18133182IPR001005SANT/Myb domain
PfamPF002491.4E-18134180IPR001005SANT/Myb domain
CDDcd001674.12E-16136180No hitNo description
Gene3DG3DSA:1.10.10.601.2E-27139188IPR009057Homeodomain-like
SMARTSM007177.4E-16185233IPR001005SANT/Myb domain
PROSITE profilePS5129421.745185235IPR017930Myb domain
PfamPF002494.4E-15186229IPR001005SANT/Myb domain
CDDcd001674.03E-12188231No hitNo description
Gene3DG3DSA:1.10.10.603.1E-22189234IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 509 aa     Download sequence    Send to blast
MSYSFNPAAS SPDEMDLQEE TGKVKIEDQC VENKQSTPAS CSSVSEGSAG SSHKSPTVAS  60
PATASPTHRY LGRTSGPIRR AKGGWTLEED ETLRRAVGTF KGKSWKKIAE FFHDRTEVQC  120
LHRWQKVLNP DLVKGPWTQE EDEKIVELVE KYGPAKWSVI AESLPGRIGK QCRERWHNHL  180
NPGINKDAWT SEEEVALMNA HRIHGNKWAE IAKVLPGRTD NAIKNHWNSS LKKKSEFYLI  240
TGRLPPPTTA KNGVPDSVTK RSSSAQKRGS DSVTQTPSRT TDINNPDEDG NCQLNSSVPL  300
EEIVTASRMT GVNEYSCSPQ FLNPEPLPEN GEVAVNGYHL YYKPQIEYYM ASEADTQRMS  360
GYECSCSPIA SPVSFFTPPP CRNEYSNGLA PRSPESFLRE AGRTYPNTPS IFRKRRRRVV  420
VPDNKNAAKT DEAKEVDQKV NDGKDSSESP DCEEIQKNGS NAYNLSPPYR IRSKRTAVFK  480
SRQLEFISAE EDKADDETKS SEKDMLLD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C1e-67812345158MYB PROTO-ONCOGENE PROTEIN
1h89_C1e-67812345158MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1412416RKRRR
2413418KRRRRV
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds 5'-AACGG-3' motifs in gene promoters (By similarity). Transcription repressor that regulates organ growth. Binds to the promoters of G2/M-specific genes and to E2F target genes to prevent their expression in post-mitotic cells and to restrict the time window of their expression in proliferating cells (PubMed:26069325). {ECO:0000250|UniProtKB:Q94FL9, ECO:0000269|PubMed:26069325}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.22252s0130.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by ethylene, auxin (IAA), jasmonic acid (JA) and salicylic acid (SA). {ECO:0000269|PubMed:16463103}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY1426490.0AY142649.1 Arabidopsis thaliana putative MYB family transcription factor (At3g09370) mRNA, complete cds.
GenBankAY5196510.0AY519651.1 Arabidopsis thaliana MYB transcription factor (At3g09370) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010486504.10.0PREDICTED: transcriptional activator Myb-like isoform X1
SwissprotQ8H1P90.0MB3R3_ARATH; Transcription factor MYB3R-3
TrEMBLR0HXM60.0R0HXM6_9BRAS; Uncharacterized protein (Fragment)
STRINGBostr.22252s0130.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16672887
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G09370.20.0myb domain protein 3r-3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Kobayashi K, et al.
    Transcriptional repression by MYB3R proteins regulates plant organ growth.
    EMBO J., 2015. 34(15): p. 1992-2007
    [PMID:26069325]
  3. Chen P, et al.
    Arabidopsis R1R2R3-Myb proteins are essential for inhibiting cell division in response to DNA damage.
    Nat Commun, 2017. 8(1): p. 635
    [PMID:28935922]