PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.22252s0012.2.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family NAC
Protein Properties Length: 449aa    MW: 50610.7 Da    PI: 5.8184
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.22252s0012.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM169.69.9e-53271541128
                   NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatg 87 
                           l+pGfrFhPtdeelv +yLk+kv gk++++ ++i evdiyk+ePwdL   +++k++++ewyfFs  dkky +g r nrat++gyWkatg
  Bostr.22252s0012.2.p  27 LAPGFRFHPTDEELVIYYLKRKVLGKPVRF-DAIGEVDIYKHEPWDLAvfSRLKTRDQEWYFFSALDKKYGNGARMNRATNKGYWKATG 114
                           579************************999.99**************8544899999******************************** PP

                   NAM  88 kdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                           kd+e+ + + +l g+kktLvf++grap+g +t+Wvmheyrl
  Bostr.22252s0012.2.p 115 KDREIRR-DIQLLGMKKTLVFHSGRAPDGLRTNWVMHEYRL 154
                           ******9.999****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.24E-6122178IPR003441NAC domain
PROSITE profilePS5100557.20827177IPR003441NAC domain
PfamPF023653.2E-2729154IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 449 aa     Download sequence    Send to blast
MGRESLAVVT SPPSATAPCT AVSATSLAPG FRFHPTDEEL VIYYLKRKVL GKPVRFDAIG  60
EVDIYKHEPW DLAVFSRLKT RDQEWYFFSA LDKKYGNGAR MNRATNKGYW KATGKDREIR  120
RDIQLLGMKK TLVFHSGRAP DGLRTNWVMH EYRLVEYETE NNGSLLDAYV LCRVFHKNNI  180
GPPSGNRYAP FMEEEWADGG GALIPGVDAR VRVEPLPQAN GNNQMDQEIH SASKNLININ  240
ELPRDGTPMD IEPNQQNHHE SDIKPQENKN RIAYDEDEET LKCEHAEEDE RPPPLCVLNK  300
EAPLPLLQYK RRRQNESNNS SRNTQDHCSS TITTVDNTTT LISSSAAATN TAISALLEFS  360
LMGISDKKEN QQPPPHKEAS PPPTPFASPE EKVNDLQKEI HQMSVERETF KLEMMSAEAM  420
ISILQSRIDA LRQENEELKK NNANGQAI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-502217912167NO APICAL MERISTEM PROTEIN
1ut4_B4e-502217912167NO APICAL MERISTEM PROTEIN
1ut7_A4e-502217912167NO APICAL MERISTEM PROTEIN
1ut7_B4e-502217912167NO APICAL MERISTEM PROTEIN
3swm_A4e-502217915170NAC domain-containing protein 19
3swm_B4e-502217915170NAC domain-containing protein 19
3swm_C4e-502217915170NAC domain-containing protein 19
3swm_D4e-502217915170NAC domain-containing protein 19
3swp_A4e-502217915170NAC domain-containing protein 19
3swp_B4e-502217915170NAC domain-containing protein 19
3swp_C4e-502217915170NAC domain-containing protein 19
3swp_D4e-502217915170NAC domain-containing protein 19
4dul_A4e-502217912167NAC domain-containing protein 19
4dul_B4e-502217912167NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that binds to the motif 5'-(C/T)A(C/A)G-3' in the promoter of target genes (PubMed:25578968). Binds also to the 5'-CTTGNNNNNCAAG-3' consensus sequence in chromatin (PubMed:26617990). Can bind to the mitochondrial dysfunction motif (MDM) present in the upstream regions of mitochondrial dysfunction stimulon (MDS) genes involved in mitochondrial retrograde regulation (MRR) (PubMed:24045019). Together with NAC051/NAC052 and JMJ14, regulates gene expression and flowering time by associating with the histone demethylase JMJ14, probably by the promotion of RNA-mediated gene silencing (PubMed:25578968, PubMed:26617990). {ECO:0000269|PubMed:24045019, ECO:0000269|PubMed:25578968, ECO:0000269|PubMed:26617990}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.22252s0012.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0597950.0AY059795.1 Arabidopsis thaliana unknown protein (At3g10480) mRNA, complete cds.
GenBankAY0912620.0AY091262.1 Arabidopsis thaliana unknown protein (At3g10480) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010486659.10.0PREDICTED: NAC domain-containing protein 59-like
SwissprotQ9SQX90.0NAC50_ARATH; NAC domain containing protein 50
TrEMBLR0G4Z30.0R0G4Z3_9BRAS; Uncharacterized protein
STRINGBostr.22252s0012.1.p0.0(Boechera stricta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10480.20.0NAC domain containing protein 50
Publications ? help Back to Top
  1. Zhang S, et al.
    C-terminal domains of a histone demethylase interact with a pair of transcription factors and mediate specific chromatin association.
    Cell Discov, 2019.
    [PMID:26617990]