PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bostr.2199s0044.1.p

Organism

Boechera stricta

Taxonomic ID

72658

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera

Family

LBD

Protein Properties

Length: 108aa MW: 12512.8 Da PI: 10.2178

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bostr.2199s0044.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	59.5	9.4e-19	19	95	24	100
DUF260 24 aeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 ++++ +++n+++lFG+ n++++++++p+e+++++++s+++ ++++a+dPv+G +++++kl ++++ ka l++l+e+ Bostr.2199s0044.1.p 19 KNKNCEYKNANELFGTPNIIRMMRRTPKEKKHMLATSIIMDGNMWAKDPVSGGFSMMRKLMWEIKLRKAYLHELEEK 95 566789*****************************************************************998876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	11.062	1	96	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.1E-14	18	92	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 108 aa Download sequence Send to blast
MEAFGADVNR GRCSVCTTKN KNCEYKNANE LFGTPNIIRM MRRTPKEKKH MLATSIIMDG 60 NMWAKDPVSG GFSMMRKLMW EIKLRKAYLH ELEEKVKEVK EKTELRL*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bostr.2199s0044.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006409041.2	4e-35	LOW QUALITY PROTEIN: LOB domain-containing protein 8
Swissprot	Q9C8V8	1e-35	LBD5_ARATH; LOB domain-containing protein 5
TrEMBL	R0GAE3	2e-33	R0GAE3_9BRAS; Uncharacterized protein
STRING	Bostr.2199s0044.1.p	2e-74	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12282	14	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G36000.1	9e-38	LOB domain-containing protein 5

Link Out ? help Back to Top
Phytozome	Bostr.2199s0044.1.p