PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bostr.2128s0078.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
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Family | HSF | ||||||||
Protein Properties | Length: 415aa MW: 46653.3 Da PI: 4.8633 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 106.4 | 2.2e-33 | 58 | 149 | 2 | 102 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91 Fl+k++++++d++l+ +isw +g+sfvv+d+ efa+ +Lp+ Fkh+nf+SFvRQLn+YgF+k+++++ weF+++ F +gkk Bostr.2128s0078.1.p 58 FLSKTFDLVDDPTLDPVISWGLTGSSFVVWDPLEFARVLLPRNFKHNNFSSFVRQLNTYGFRKIDTDK---------WEFANEAFLRGKK 138 9****************************************************************999.........************* PP XXXXXXXXXXX CS HSF_DNA-bind 92 ellekikrkks 102 +ll++i+r++s Bostr.2128s0078.1.p 139 HLLKNIQRRRS 149 ********987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46785 | 1.5E-33 | 53 | 147 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 9.1E-56 | 54 | 147 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene3D | G3DSA:1.10.10.10 | 7.6E-36 | 55 | 147 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 1.7E-29 | 58 | 147 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.9E-17 | 58 | 81 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.9E-17 | 96 | 108 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 97 | 121 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.9E-17 | 109 | 121 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009408 | Biological Process | response to heat | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 415 aa Download sequence Send to blast |
MIPKNDDFSK PTPISVPVST RPDITGSLYV DTDMGFSGSP PPLPMPLDIL QGNAVPPFLS 60 KTFDLVDDPT LDPVISWGLT GSSFVVWDPL EFARVLLPRN FKHNNFSSFV RQLNTYGFRK 120 IDTDKWEFAN EAFLRGKKHL LKNIQRRRSP QSNQTCISSS SQSQGSPTEV GREIEKLRKE 180 RRALMEEMVG LQQQNRGTAH HVDTVNQRLK AAEQRQKQML SFLAKLFQNP GFLERLKNLK 240 GREKRALGFE NAKRKFIKHQ QPQDSPTGGE MVKYEADDWE RLLMYDEETE NTPLSSQQGM 300 TSSVGGTDPK GKNLMNPSEE GMIKPDYLLP FPEGLVKQEE TWSMGFDTII PSFSNTDVWG 360 NTMDYNDVSE FGSVAETTSG GLPDVNWEQF AAGITETGFN WPTGDDDNTP MDDP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ldu_A | 1e-24 | 55 | 152 | 17 | 125 | Heat shock factor protein 1 |
5d5u_B | 1e-24 | 55 | 147 | 26 | 129 | Heat shock factor protein 1 |
5d5v_B | 1e-24 | 55 | 147 | 26 | 129 | Heat shock factor protein 1 |
5d5v_D | 1e-24 | 55 | 147 | 26 | 129 | Heat shock factor protein 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). Involved in heat stress response. Activated by DREB2A under heat stress. {ECO:0000269|PubMed:17999647, ECO:0000269|PubMed:18261981}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bostr.2128s0078.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By heat stress. {ECO:0000269|PubMed:17999647, ECO:0000269|PubMed:18261981}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK117318 | 0.0 | AK117318.1 Arabidopsis thaliana At5g03720 mRNA for putative heat shock transcription factor, complete cds, clone: RAFL16-88-H09. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002873110.1 | 0.0 | heat stress transcription factor A-3 | ||||
Swissprot | Q8GYY1 | 0.0 | HSFA3_ARATH; Heat stress transcription factor A-3 | ||||
TrEMBL | D7LWT0 | 0.0 | D7LWT0_ARALL; AT-HSFA3 | ||||
STRING | Bostr.2128s0078.1.p | 0.0 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10950 | 25 | 29 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G03720.1 | 0.0 | heat shock transcription factor A3 |
Link Out ? help Back to Top | |
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Phytozome | Bostr.2128s0078.1.p |