PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.21132s0013.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family NAC
Protein Properties Length: 302aa    MW: 34545 Da    PI: 5.9157
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.21132s0013.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM35.14e-11312038128
                   NAM  38 diykvePwdLpkkvka..eekewyfFskrdkkya....tgkrknra........tksgyWkatgkdkevlskkgelvglkktLvfy... 109
                           d+y  ePw L+++ ++  +e+ewy+F+kr++ ++     g+ ++r+        +++g W a  +++ + + +g  +g+k+ L++    
  Bostr.21132s0013.1.p   3 DVYAKEPWLLDHTNNSflKEDEWYYFAKRSQISKknigCGQYSKRKiigdnndgVDRGNWDANDTKNIIDEDTGIIIGIKQNLTYKnps 91 
                           899*******84333345888*******99877633444667777568888887889*****99988888889999**********777 PP

                   NAM 110 ...kgrapkge.........ktdWvmheyrl 128
                              k  +++g+         +++W+m+e+rl
  Bostr.21132s0013.1.p  92 qnkK--QKRGNgaadyvpssESSWIMDEFRL 120
                           6441..2222244555555599*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100521.0911140IPR003441NAC domain
SuperFamilySSF1019419.42E-163140IPR003441NAC domain
PfamPF023655.7E-623120IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MKDVYAKEPW LLDHTNNSFL KEDEWYYFAK RSQISKKNIG CGQYSKRKII GDNNDGVDRG  60
NWDANDTKNI IDEDTGIIIG IKQNLTYKNP SQNKKQKRGN GAADYVPSSE SSWIMDEFRL  120
PADEAEKNFQ ELVLCKIHKK KKSKKDKDHH HEDEFQELVL SKSHKKKNSK KEKAHHNEAS  180
TSTNHHQHES SSSPEQQQPD NIERESVLAA SSEQQQPLLW GGSESEIPER NRDQSGEENM  240
VHQTDALTTE KDEQVEAMEM TRQGEGDWIA EFMDKMEAVK ESGQNLLHQY AALCSSAPQR  300
S*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.21132s0013.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002880867.16e-88NAC domain-containing protein 19
RefseqXP_002880870.12e-87NAC domain-containing protein 55
TrEMBLD7LFH61e-86D7LFH6_ARALL; Uncharacterized protein
TrEMBLD7LFH94e-86D7LFH9_ARALL; Uncharacterized protein
STRINGBostr.21132s0013.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM26071358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18300.12e-07NAC domain containing protein 88