PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.20903s0171.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family FAR1
Protein Properties Length: 268aa    MW: 30591.5 Da    PI: 6.378
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.20903s0171.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR194.11.7e-29101188291
                  FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                           fYn+YA++vGF +r+sk ++s+++g+ + r++vC+keg+r ++k++  k  r+raetr+gC+a++ ++ke++gkw++tk+++eHnH+l+
  Bostr.20903s0171.1.p 101 FYNAYATKVGFVIRVSKLSRSRHDGSPIGRQLVCNKEGYRLPSKRD--KVIRQRAETRVGCRAMILIRKENSGKWVITKFVKEHNHPLM 187
                           9******************************************999..999************************************98 PP

                  FAR1  91 p 91 
                           p
  Bostr.20903s0171.1.p 188 P 188
                           6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.8E-27101188IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MDFRIDNGVA AGMMMGIPVE LEVTTVENHN EMGESSGQAM IEQDDDNHNE MGENSGQAMI  60
EQDEKVSPDS IPLAVADMAE VQGDEPYVGQ EFESEAAAHG FYNAYATKVG FVIRVSKLSR  120
SRHDGSPIGR QLVCNKEGYR LPSKRDKVIR QRAETRVGCR AMILIRKENS GKWVITKFVK  180
EHNHPLMPGR VRRGCIYDQY PNEHDKIQEL MQQLAAEKKR AATYKRHLEM LFEQIEQHNE  240
ILSKRIQHIV DNVRNLEQRD HQQNHQV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.20903s0171.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0580890.0AY058089.1 Arabidopsis thaliana AT3g59470/T16L24_20 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020882000.10.0protein FAR-RED ELONGATED HYPOCOTYL 3 isoform X1
TrEMBLF4J8B60.0F4J8B6_ARATH; Far-red impaired responsive (FAR1) family protein
STRINGBostr.20903s0171.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM73022539
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G59470.20.0FAR1 family protein