PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.20903s0049.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family MYB_related
Protein Properties Length: 656aa    MW: 72993.2 Da    PI: 8.2761
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.20903s0049.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.86e-141366148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT......TTS-HHHHHHHHHHHT CS
       Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg......kgRtlkqcksrwqkyl 48
                          ++ W+t E++ll++av+++G ++W+++a++++       ++t+ +c++++++++
  Bostr.20903s0049.1.p 13 KQTWSTMEELLLACAVHRHGIDSWDSVAAEIQkqnstfRTLTAFDCRHKYYDLK 66
                          789************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.9E-6766IPR009057Homeodomain-like
PROSITE profilePS500906.516866IPR017877Myb-like domain
SuperFamilySSF466891.17E-61168IPR009057Homeodomain-like
SMARTSM007179.6E-91268IPR001005SANT/Myb domain
PfamPF002496.3E-131366IPR001005SANT/Myb domain
CDDcd001671.60E-61566No hitNo description
SMARTSM002977.4E-17131397IPR001487Bromodomain
SuperFamilySSF473702.62E-19293410IPR001487Bromodomain
Gene3DG3DSA:1.20.920.105.1E-15294393IPR001487Bromodomain
CDDcd043691.52E-18297392No hitNo description
PfamPF004398.6E-13303382IPR001487Bromodomain
PROSITE profilePS5001414.279305378IPR001487Bromodomain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 656 aa     Download sequence    Send to blast
MAKPENDKNS PEKQTWSTME ELLLACAVHR HGIDSWDSVA AEIQKQNSTF RTLTAFDCRH  60
KYYDLKRRFS HKLVSPGSTE GEETVAAEIS SVPWLEELRK LRVDELRREV ERYDLSISSL  120
QLKVKRLEDE REESLKIENS DLDKIAETKE NHRESGNNSG VPVAEPVNSP DPKDNNTGTG  180
SENTNRDVKI AEPVDEEPNR IGGEDNDEKP VREDSGRGSC ESAANSDRED TGREGNDSPE  240
FVESMDESKG EEEAKEMSDV QSSASLPRKE TPVEQDQPDN EDQSLTVNKN PIESQPLFDF  300
IEILKSHPIG SHFSRRLESQ LQETPDYDRI IRQHIDFEMI RSRVEEGYYK TSRSKFFRDL  360
LLLINNARVF YGEPSSEFSA AKQLYQLIKK QMTLKIPKQT LPPLKEEPLV TSKEEVTVPS  420
LKPTLSVPMI ACRKRSSLAV RSSASVTEPS KKKTKVASAV DEKAVSEEED ETSDKDEEPI  480
FSKKMTRGRA LSTAKKVGSR NVKTSLNAGL PSKGRSSNDS SEPRKIVQEK KGNNTSGGSK  540
KQSAASFLKR MKGVSSSETV VETVKADSSN GKRGAEQRKS NSKNEKVDAA KLSAGQKRLS  600
GKKPTIEKGS PANKNTGVAS KRGTALSSPL MAKRDSETNE KETGSSARLK KRSRR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.20903s0049.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL1329770.0AL132977.1 Arabidopsis thaliana DNA chromosome 3, BAC clone T10K17.
GenBankCP0026860.0CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010427692.10.0PREDICTED: uncharacterized protein LOC104712482 isoform X1
TrEMBLA0A1I9LTJ30.0A0A1I9LTJ3_ARATH; DNA-binding bromodomain-containing protein
STRINGBostr.20903s0049.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM65302539
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57980.10.0DNA-binding bromodomain-containing protein