PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bostr.20505s0113.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
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Family | WRKY | ||||||||
Protein Properties | Length: 258aa MW: 29178 Da PI: 5.351 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 85.8 | 4e-27 | 133 | 193 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 dD y+WrKYGqKe+ g +fpr+YYrCt++ +Cp+kk+v+r +edp ++ +tY+g+H+++ Bostr.20505s0113.1.p 133 DDNYTWRKYGQKEILGFTFPRAYYRCTHQklyKCPAKKQVQRLDEDPYTFRVTYRGSHTCH 193 8****************************9999*************************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.5E-26 | 128 | 193 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.83E-24 | 131 | 194 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.6E-33 | 132 | 194 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.3E-24 | 133 | 193 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 20.231 | 133 | 190 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 258 aa Download sequence Send to blast |
MEEIMSMIFN GINLVKELEF SLSSQELTES DLSSSLSSIS TLFGDANERL TILLAWRNSL 60 AQNQPEPQPI PMLDMMMQTE PALMQDHWLR YPLMQTVEGD DTSRPRHRRR KKDIGEEETV 120 LVAAVGRMKI PPDDNYTWRK YGQKEILGFT FPRAYYRCTH QKLYKCPAKK QVQRLDEDPY 180 TFRVTYRGSH TCHFFTTSSI SSAPATTTTA NVPAVVNMAE AMIGNMDSVV PLGEPYFSHH 240 CLVPGDDGDG DTWNSPS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6ir8_A | 3e-20 | 133 | 192 | 9 | 68 | OsWRKY45 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 107 | 112 | RRRKKD |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bostr.20505s0113.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010516245.1 | 1e-155 | PREDICTED: WRKY transcription factor 55-like | ||||
Swissprot | Q9SHB5 | 8e-77 | WRK55_ARATH; WRKY transcription factor 55 | ||||
TrEMBL | D7LVF4 | 1e-154 | D7LVF4_ARALL; Predicted protein | ||||
STRING | Bostr.20505s0113.1.p | 0.0 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3641 | 27 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40740.1 | 4e-67 | WRKY DNA-binding protein 55 |
Link Out ? help Back to Top | |
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Phytozome | Bostr.20505s0113.1.p |
Publications ? help Back to Top | |||
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