PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.20505s0007.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family MIKC_MADS
Protein Properties Length: 256aa    MW: 28647.1 Da    PI: 5.7612
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.20505s0007.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF88.92.7e-28959151
                          S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                          k+ien   rqvtfskRrng++KKA+ELS+LCdaeva+iifsstgk+y++ss
  Bostr.20505s0007.1.p  9 KKIENVNSRQVTFSKRRNGLMKKAKELSILCDAEVAIIIFSSTGKIYDFSS 59
                          68***********************************************96 PP
2K-box55.32.8e-19961781799
                 K-box  17 lqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                             ++ + +k e+e Lq  + +l+G++L+ +s+ +L +Le+qL++sl +++++K+++ll+qie+++ +ek++ een+ Lrk++e
  Bostr.20505s0007.1.p  96 VLRNDDSMKGELERLQLAIERLKGKELDGMSFPDLISLENQLNESLHSVKDQKTQILLNQIERSRLQEKRALEENQILRKQVE 178
                           55566899************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006631.833161IPR002100Transcription factor, MADS-box
SMARTSM004326.7E-39160IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.23E-31278IPR002100Transcription factor, MADS-box
CDDcd002657.41E-42275No hitNo description
PRINTSPR004045.0E-29323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003193.2E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004045.0E-292338IPR002100Transcription factor, MADS-box
PRINTSPR004045.0E-293859IPR002100Transcription factor, MADS-box
PfamPF014863.3E-1590177IPR002487Transcription factor, K-box
PROSITE profilePS5129712.95193183IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0009910Biological Processnegative regulation of flower development
GO:0048577Biological Processnegative regulation of short-day photoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MGRGRIEIKK IENVNSRQVT FSKRRNGLMK KAKELSILCD AEVAIIIFSS TGKIYDFSSG  60
CMEQILSRYG NTTASTEHKQ REQQLLLSAS HENDAVLRND DSMKGELERL QLAIERLKGK  120
ELDGMSFPDL ISLENQLNES LHSVKDQKTQ ILLNQIERSR LQEKRALEEN QILRKQVELL  180
GRGSGPKVLS ERPQVSSPEA DPESSSSDDD ENDNEEHHSD TSLQLGLSSS GYFTKRKKPK  240
IELVCDNSGS QVASD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6bz1_A1e-20187185MEF2 CHIMERA
6bz1_B1e-20187185MEF2 CHIMERA
6bz1_C1e-20187185MEF2 CHIMERA
6bz1_D1e-20187185MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the negative regulation of flowering, probably through the photoperiodic pathway. Prevents premature flowering. Downstream regulator of a subset of the MIKC* MADS-controlled genes required during pollen maturation. {ECO:0000269|PubMed:17521410, ECO:0000269|PubMed:18034896, ECO:0000269|PubMed:18799658}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.20505s0007.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3126630.0AF312663.1 Arabidopsis thaliana MADS-box protein AGL18 (AGL18) mRNA, complete cds.
GenBankAK2222200.0AK222220.1 Arabidopsis thaliana mRNA for MADS transcription factor-like protein, complete cds, clone: RAFL25-29-C20.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010504666.11e-164PREDICTED: agamous-like MADS-box protein AGL18
RefseqXP_020882293.11e-164agamous-like MADS-box protein AGL18
RefseqXP_020882294.11e-164agamous-like MADS-box protein AGL18
SwissprotQ9M2K81e-159AGL18_ARATH; Agamous-like MADS-box protein AGL18
TrEMBLA0A087GYM21e-159A0A087GYM2_ARAAL; Uncharacterized protein
STRINGBostr.20505s0007.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM60612139
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57390.11e-149AGAMOUS-like 18